C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class II, DQ alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460633 HLA-DQA1-003 ENSG00000196735 9606 + 6:32637431-32647062 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000460633
Transcript ID Adipose Adrenal Bladder Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000460633 0.124±0.00 3.775±0.00 0.331±0.00 1.315±0.00 0.168±0.00 0.171±0.02 0.139±0.00 1.649±0.00 0.072±0.00 0.062±0.01 0.111±0.00 0.096±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XS CIL_0002XS_0008 CGP 6:32552990-32647062
CIL_0001PL CIL_0001PL_0006 CGP 6:32628179-32668383

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174751 H2-Aa-004 protein_coding Mus_musculus 0 211
ENSMUST00000040655 H2-Aa-001 protein_coding Mus_musculus 0 211

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