C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002XS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041705-ENSDARG00000079593 CGP 7955 8:45758566-45769605
GeneTranscriptPositionBiotype
ENSDARG00000041705 (si:busm1-228j01.6)
si:busm1-228j01.6 		ENSDART00000098138 (si:busm1-228j01.6-001) 45758566-45761489 protein_coding
ENSDARG00000079593 (si:busm1-228j01.5)
si:busm1-228j01.5 		ENSDART00000061132 (si:busm1-228j01.5-201) 45768098-45769605 protein_coding
CIL_0002XS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054921-ENSDARG00000020286 CGP 7955 4:61874514-61893205
GeneTranscriptPositionBiotype
ENSDARG00000020286 (zgc:123107)
zgc:123107 		ENSDART00000020370 (zgc:123107-201) 61887203-61893205 protein_coding
ENSDART00000112608 (zgc:123107-202) 61887203-61893205 protein_coding
ENSDARG00000054921 (wu:fd58b11)
wu:fd58b11 		ENSDART00000077207 (wu:fd58b11-201) 61874514-61880599 protein_coding
CIL_0002XS_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074510-ENSDARG00000070206 CGP 7955 8:37476789-37498906
GeneTranscriptPositionBiotype
ENSDARG00000070206 (si:zfos-2070c2.1)
si:zfos-2070c2.1 		ENSDART00000102847 (si:zfos-2070c2.1-001) 37488525-37498897 protein_coding
ENSDART00000140959 (si:zfos-2070c2.1-002) 37489444-37498906 protein_coding
ENSDARG00000074510 (si:busm1-104n07.3)
si:busm1-104n07.3 		ENSDART00000097932 (si:busm1-104n07.3-201) 37476789-37482071 protein_coding
ENSDART00000148323 (si:busm1-104n07.3-001) 37480049-37482114 protein_coding
CIL_0002XS_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076307-ENSDARG00000031745 CGP 7955 8:37510422-37543263
GeneTranscriptPositionBiotype
ENSDARG00000031745 (si:busm1-266f07.2)
si:busm1-266f07.2 		ENSDART00000048448 (si:busm1-266f07.2-001) 37539907-37543263 protein_coding
ENSDARG00000076307 (si:zfos-2070c2.3)
si:zfos-2070c2.3 		ENSDART00000108538 (si:zfos-2070c2.3-001) 37510422-37511403 protein_coding
CIL_0002XS_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079105-ENSDARG00000001832 CGP 7955 8:37546100-37576393
GeneTranscriptPositionBiotype
ENSDARG00000001832 (si:ch1073-403i13.1)
si:ch1073-403i13.1 		ENSDART00000043525 (si:ch1073-403i13.1-001) 37574076-37576393 protein_coding
ENSDARG00000079105 (mhc2dab)
major histocompatibility complex class II DAB gene 		ENSDART00000111240 (mhc2dab-001) 37546100-37548453 protein_coding
CIL_0002XS_0006 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000088872-ENSDARG00000086294 CGP 7955 8:45773380-45779781
GeneTranscriptPositionBiotype
ENSDARG00000086294 (CU914776.1)
Uncharacterized protein 		ENSDART00000129901 (CU914776.1-201) 45778095-45779781 protein_coding
ENSDARG00000088872 (si:busm1-228j01.4)
si:busm1-228j01.4 		ENSDART00000123658 (si:busm1-228j01.4-201) 45773380-45774524 protein_coding
CIL_0002XS_0007 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179344-ENSG00000237541 CGP 9606 6:32659467-32747215
GeneTranscriptPositionBiotype
ENSG00000179344 (HLA-DQB1)
major histocompatibility complex, class II, DQ beta 1 		ENST00000374943 (HLA-DQB1-002) 32659467-32666684 protein_coding
ENST00000399079 (HLA-DQB1-004) 32659467-32666664 protein_coding
ENST00000399082 (HLA-DQB1-007) 32659467-32666652 protein_coding
ENST00000399084 (HLA-DQB1-003) 32659467-32668383 protein_coding
ENST00000434651 (HLA-DQB1-001) 32659467-32666694 protein_coding
ENST00000443574 (HLA-DQB1-010) 32659886-32662450 processed_transcript
ENST00000460185 (HLA-DQB1-009) 32659886-32660440 processed_transcript
ENST00000484729 (HLA-DQB1-008) 32660107-32666638 nonsense_mediated_decay
ENST00000487676 (HLA-DQB1-005) 32659467-32666638 retained_intron
ENSG00000223534 (HLA-DQB1-AS1)
HLA-DQB1 antisense RNA 1 		ENST00000419852 (HLA-DQB1-AS1-001) 32659880-32660729 antisense
ENSG00000226030 (HLA-DQB3)
major histocompatibility complex, class II, DQ beta 3 		ENST00000425319 (HLA-DQB3-001) 32730758-32731695 unprocessed_pseudogene
ENSG00000232080 (XXbac-BPG254F23.7)
 ENST00000448198 (XXbac-BPG254F23.7-001) 32718005-32718827 lincRNA
ENST00000458375 (XXbac-BPG254F23.7-003) 32718385-32718835 lincRNA
ENST00000585372 (XXbac-BPG254F23.7-004) 32718029-32718811 retained_intron
ENST00000621553 (XXbac-BPG254F23.7-005) 32718029-32718832 lincRNA
ENSG00000235040 (MTCO3P1)
MT-CO3 pseudogene 1 		ENST00000422088 (MTCO3P1-001) 32706124-32706955 unprocessed_pseudogene
ENSG00000237541 (HLA-DQA2)
major histocompatibility complex, class II, DQ alpha 2 		ENST00000374940 (HLA-DQA2-001) 32741342-32747215 protein_coding
CIL_0002XS_0008 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196126-ENSG00000196735 CGP 9606 6:32552990-32647062
GeneTranscriptPositionBiotype
ENSG00000196126 (HLA-DRB1)
major histocompatibility complex, class II, DR beta 1 		ENST00000360004 (HLA-DRB1-001) 32578769-32589848 protein_coding
ENST00000611060 (HLA-DRB1-201) 32552990-32589805 protein_coding
ENSG00000196735 (HLA-DQA1)
major histocompatibility complex, class II, DQ alpha 1 		ENST00000343139 (HLA-DQA1-001) 32637357-32643652 protein_coding
ENST00000374949 (HLA-DQA1-009) 32637420-32643017 protein_coding
ENST00000395363 (HLA-DQA1-004) 32637401-32643652 protein_coding
ENST00000422863 (HLA-DQA1-010) 32628179-32637531 protein_coding
ENST00000460633 (HLA-DQA1-003) 32637431-32647062 retained_intron
ENST00000482745 (HLA-DQA1-002) 32637427-32643272 nonsense_mediated_decay
ENST00000496318 (HLA-DQA1-007) 32637406-32642981 protein_coding
ENSG00000229391 (HLA-DRB6)
major histocompatibility complex, class II, DR beta 6 (pseudogene) 		ENST00000411500 (HLA-DRB6-002) 32552713-32560002 processed_transcript
ENST00000437183 (HLA-DRB6-003) 32552949-32560022 processed_transcript
ENST00000437650 (HLA-DRB6-001) 32553046-32558186 transcribed_unprocessed_pseudogene
CIL_0002XS_0009 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000073421-ENSMUSG00000036594 CGP 10090 17:34263209-34287827
GeneTranscriptPositionBiotype
ENSMUSG00000036594 (H2-Aa)
histocompatibility 2, class II antigen A, alpha 		ENSMUST00000040655 (H2-Aa-001) 34282744-34287827 protein_coding
ENSMUST00000165139 (H2-Aa-003) 34283772-34287777 retained_intron
ENSMUST00000173944 (H2-Aa-002) 34286465-34287819 processed_transcript
ENSMUST00000174751 (H2-Aa-004) 34282765-34287791 protein_coding
ENSMUSG00000073421 (H2-Ab1)
histocompatibility 2, class II antigen A, beta 1 		ENSMUST00000040828 (H2-Ab1-001) 34263209-34269418 protein_coding
ENSMUST00000173103 (H2-Ab1-003) 34267102-34268034 retained_intron
ENSMUST00000174875 (H2-Ab1-002) 34268270-34269394 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XS_0001ENSDARG00000041705ENSDART00000098138ENSDARG00000079593ENSDART00000061132CIL_0002XS_0002ENSDARG00000020286ENSDART00000020370ENSDART00000112608ENSDARG00000054921ENSDART00000077207CIL_0002XS_0003ENSDARG00000070206ENSDART00000102847ENSDART00000140959ENSDARG00000074510ENSDART00000097932ENSDART00000148323CIL_0002XS_0004ENSDARG00000031745ENSDART00000048448ENSDARG00000076307ENSDART00000108538CIL_0002XS_0005ENSDARG00000001832ENSDART00000043525ENSDARG00000079105ENSDART00000111240CIL_0002XS_0006ENSDARG00000086294ENSDART00000129901ENSDARG00000088872ENSDART00000123658CIL_0002XS_0007ENSG00000179344ENST00000374943ENST00000399079ENST00000399082ENST00000399084ENST00000434651ENST00000443574ENST00000460185ENST00000484729ENST00000487676ENSG00000223534ENST00000419852ENSG00000226030ENST00000425319ENSG00000232080ENST00000448198ENST00000458375ENST00000585372ENST00000621553ENSG00000235040ENST00000422088ENSG00000237541ENST00000374940CIL_0002XS_0008ENSG00000196126ENST00000360004ENST00000611060ENSG00000196735ENST00000343139ENST00000374949ENST00000395363ENST00000422863ENST00000460633ENST00000482745ENST00000496318ENSG00000229391ENST00000411500ENST00000437183ENST00000437650CIL_0002XS_0009ENSMUSG00000036594ENSMUST00000040655ENSMUST00000165139ENSMUST00000173944ENSMUST00000174751ENSMUSG00000073421ENSMUST00000040828ENSMUST00000173103ENSMUST00000174875
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XS_0001ENSDARG00000041705ENSDART00000098138ENSDARG00000079593ENSDART00000061132CIL_0002XS_0002ENSDARG00000020286ENSDART00000020370ENSDART00000112608ENSDARG00000054921ENSDART00000077207CIL_0002XS_0003ENSDARG00000070206ENSDART00000102847ENSDART00000140959ENSDARG00000074510ENSDART00000097932ENSDART00000148323CIL_0002XS_0004ENSDARG00000031745ENSDART00000048448ENSDARG00000076307ENSDART00000108538CIL_0002XS_0005ENSDARG00000001832ENSDART00000043525ENSDARG00000079105ENSDART00000111240CIL_0002XS_0006ENSDARG00000086294ENSDART00000129901ENSDARG00000088872ENSDART00000123658CIL_0002XS_0007ENSG00000179344ENST00000374943ENST00000399079ENST00000434651ENST00000460185ENST00000484729ENST00000487676ENSG00000223534ENST00000419852ENSG00000226030ENST00000425319ENSG00000232080ENST00000448198ENST00000458375ENST00000621553ENSG00000235040ENST00000422088ENSG00000237541ENST00000374940CIL_0002XS_0008ENSG00000196126ENST00000360004ENST00000611060ENSG00000196735ENST00000343139ENST00000374949ENST00000395363ENST00000460633ENST00000496318ENSG00000229391ENST00000411500ENST00000437650CIL_0002XS_0009ENSMUSG00000036594ENSMUST00000040655ENSMUST00000174751ENSMUSG00000073421ENSMUST00000040828ENSMUST00000173103ENSMUST00000174875
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041705 ENSDART00000098138 N/A N/A N/A 0.063±0.00 N/A N/A N/A 0.384±0.23 N/A N/A N/A N/A N/A N/A
ENSDARG00000079593 ENSDART00000061132 N/A N/A N/A N/A N/A N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020286 ENSDART00000020370 N/A N/A N/A 0.875±0.37 N/A N/A 4.580±0.00 4.797±0.00 N/A N/A 1.068±0.00 N/A N/A N/A
ENSDART00000112608 N/A N/A N/A 0.900±0.00 N/A N/A 1.654±0.17 4.761±0.55 0.349±0.00 N/A N/A N/A N/A N/A
ENSDARG00000054921 ENSDART00000077207 N/A N/A N/A 2.138±0.54 N/A N/A 8.580±0.57 4.582±4.32 0.379±0.00 N/A 3.655±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070206 ENSDART00000102847 N/A N/A N/A 0.387±0.07 N/A N/A 0.249±0.00 0.772±0.29 N/A N/A N/A N/A N/A N/A
ENSDART00000140959 N/A N/A N/A N/A N/A N/A 0.167±0.00 N/A N/A N/A 0.106±0.00 N/A N/A N/A
ENSDARG00000074510 ENSDART00000097932 N/A N/A N/A 0.249±0.04 N/A N/A 0.173±0.15 0.872±0.38 0.062±0.00 N/A N/A N/A N/A N/A
ENSDART00000148323 N/A N/A N/A N/A N/A N/A N/A 0.735±0.17 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000031745 ENSDART00000048448 N/A N/A N/A 15.175±3.88 N/A N/A 66.188±18.44 76.493±24.14 2.454±0.00 N/A 18.965±0.00 N/A N/A N/A
ENSDARG00000076307 ENSDART00000108538 N/A N/A N/A N/A N/A N/A 0.391±0.30 1.014±0.54 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000001832 ENSDART00000043525 N/A N/A N/A 6.003±1.66 N/A N/A 37.794±16.56 43.500±12.16 0.617±0.00 N/A 4.303±0.00 N/A N/A N/A
ENSDARG00000079105 ENSDART00000111240 N/A N/A N/A 20.691±4.91 N/A N/A 87.749±34.12 54.477±11.58 3.483±0.00 N/A 12.037±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000086294 ENSDART00000129901 N/A N/A N/A 0.118±0.03 N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000088872 ENSDART00000123658 N/A N/A N/A 0.103±0.00 N/A N/A 0.545±0.00 0.343±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000179344 ENST00000374943 N/A N/A N/A 0.087±0.00 4.814±0.00 N/A N/A 1.177±0.00 N/A 5.928±0.00 N/A N/A 2.947±0.00 N/A
ENST00000399079 N/A N/A N/A 1.097±0.00 1.614±0.00 0.795±0.00 3.635±0.00 N/A 0.842±0.49 29.908±0.00 N/A 1.241±0.00 3.569±0.00 N/A
ENST00000399082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434651 1.686±0.00 29.126±0.00 N/A 2.466±0.00 N/A 0.333±0.00 0.451±0.00 11.297±0.00 0.350±0.00 N/A 4.653±0.00 9.568±7.93 2.255±0.65 4.975±0.00
ENST00000443574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460185 N/A N/A N/A 0.814±0.00 19.460±0.00 1.688±0.07 N/A 4.873±0.00 N/A 12.306±0.00 N/A 5.475±2.90 14.240±3.14 N/A
ENST00000484729 17.510±0.00 115.250±0.00 N/A 3.945±3.83 16.123±8.17 2.262±2.05 13.068±0.00 9.450±8.33 4.383±0.00 80.160±77.28 5.021±0.01 7.103±5.99 4.673±0.00 9.226±9.00
ENST00000487676 N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.340±0.00 0.490±0.00 N/A 0.153±0.00 N/A 0.048±0.00
ENSG00000223534 ENST00000419852 6.199±0.00 48.607±0.00 N/A 0.309±0.00 4.992±0.00 1.004±0.60 3.316±2.97 4.165±2.36 1.422±0.00 37.434±32.23 2.587±0.00 2.775±1.83 5.496±2.62 2.722±2.60
ENSG00000226030 ENST00000425319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00
ENSG00000232080 ENST00000448198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.870±3.70
ENST00000458375 N/A N/A N/A N/A N/A N/A N/A 0.359±0.00 N/A N/A N/A N/A N/A 5.704±0.00
ENST00000585372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.311±0.00
ENSG00000235040 ENST00000422088 N/A N/A N/A N/A N/A N/A 0.038±0.00 0.119±0.00 N/A 0.291±0.00 0.023±0.00 N/A N/A 0.157±0.00
ENSG00000237541 ENST00000374940 0.956±0.00 7.610±0.00 0.047±0.00 0.420±0.35 1.981±0.77 0.389±0.07 0.873±0.17 2.358±0.08 0.297±0.02 7.332±2.73 N/A 2.273±1.92 2.091±0.48 0.424±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196126 ENST00000360004 112.178±0.00 381.024±0.00 9.822±0.00 30.786±27.67 67.274±36.13 25.917±22.68 60.613±0.00 104.884±92.63 9.171±0.70 333.588±304.38 31.381±0.00 44.670±54.69 75.028±31.34 30.367±26.08
ENST00000611060 N/A N/A N/A N/A 30.207±9.47 7.903±4.31 3.741±0.00 6.595±0.00 5.863±3.53 26.863±0.00 4.685±0.00 8.246±5.26 9.331±0.00 2.588±0.00
ENSG00000196735 ENST00000343139 2.969±0.00 9.832±0.00 1.115±0.00 0.505±0.39 5.076±1.60 1.208±0.94 1.561±0.79 2.945±1.18 0.572±0.00 45.296±27.78 2.644±0.00 2.431±1.90 10.654±4.99 2.300±0.00
ENST00000374949 N/A 16.196±0.00 N/A N/A N/A 0.262±0.00 N/A 2.677±0.00 0.304±0.00 N/A N/A N/A N/A 1.049±0.00
ENST00000395363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.424±0.00
ENST00000422863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460633 0.124±0.00 3.775±0.00 0.331±0.00 N/A 1.315±0.00 N/A 0.168±0.00 0.171±0.02 0.139±0.00 1.649±0.00 0.072±0.00 0.062±0.01 0.111±0.00 0.096±0.08
ENST00000482745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496318 5.373±0.00 19.121±0.00 2.867±0.00 2.378±1.84 17.621±8.89 0.437±0.00 3.511±2.49 7.671±3.12 2.044±1.40 63.251±14.60 3.481±0.95 6.284±3.57 5.665±2.18 3.060±0.00
ENSG00000229391 ENST00000411500 N/A N/A N/A N/A 25.415±0.00 9.002±0.00 N/A N/A N/A N/A N/A N/A N/A 14.428±0.00
ENST00000437183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437650 25.382±0.00 N/A N/A N/A N/A N/A N/A N/A 3.613±0.00 N/A N/A N/A N/A 1.302±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036594 ENSMUST00000040655 241.157±34.70 106.399±15.91 124.138±2.45 0.238±0.10 700.966±55.31 133.406±13.04 43.716±16.69 106.220±17.18 17.824±16.86 330.991±59.48 12.301±14.69 132.489±19.90 4.784±8.85 4.335±2.02
ENSMUST00000165139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.599±6.32 63.662±2.93 0.482±0.16 N/A
ENSMUSG00000073421 ENSMUST00000040828 373.476±71.29 183.337±36.10 112.444±10.45 0.486±0.14 993.054±243.86 272.781±30.79 57.580±22.40 164.666±22.41 24.777±22.17 504.754±132.77 14.563±14.74 287.639±119.84 5.713±9.57 11.183±5.40
ENSMUST00000173103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.230±0.00
ENSMUST00000174875 N/A N/A N/A N/A 1005.050±0.00 N/A N/A N/A N/A N/A N/A 23.821±7.92 0.250±0.04 N/A

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