C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001PL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000031745-ENSDARG00000079105 CGP 7955 8:37539907-37548453
GeneTranscriptPositionBiotype
ENSDARG00000031745 (si:busm1-266f07.2)
si:busm1-266f07.2 		ENSDART00000048448 (si:busm1-266f07.2-001) 37539907-37543263 protein_coding
ENSDARG00000079105 (mhc2dab)
major histocompatibility complex class II DAB gene 		ENSDART00000111240 (mhc2dab-001) 37546100-37548453 protein_coding
CIL_0001PL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000055441-ENSDARG00000055447 CGP 7955 8:36283500-36289984
GeneTranscriptPositionBiotype
ENSDARG00000055441 (si:busm1-48c11.3)
si:busm1-48c11.3 		ENSDART00000077794 (si:busm1-48c11.3-201) 36283500-36286998 protein_coding
ENSDARG00000055447 (si:busm1-194e12.12)
si:busm1-194e12.12 		ENSDART00000077802 (si:busm1-194e12.12-201) 36288188-36289984 protein_coding
CIL_0001PL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070206-ENSDARG00000076307 CGP 7955 8:37488525-37511403
GeneTranscriptPositionBiotype
ENSDARG00000070206 (si:zfos-2070c2.1)
si:zfos-2070c2.1 		ENSDART00000102847 (si:zfos-2070c2.1-001) 37488525-37498897 protein_coding
ENSDART00000140959 (si:zfos-2070c2.1-002) 37489444-37498906 protein_coding
ENSDARG00000076307 (si:zfos-2070c2.3)
si:zfos-2070c2.3 		ENSDART00000108538 (si:zfos-2070c2.3-001) 37510422-37511403 protein_coding
CIL_0001PL_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074816-ENSDARG00000074510 CGP 7955 8:37465644-37482114
GeneTranscriptPositionBiotype
ENSDARG00000074510 (si:busm1-104n07.3)
si:busm1-104n07.3 		ENSDART00000097932 (si:busm1-104n07.3-201) 37476789-37482071 protein_coding
ENSDART00000148323 (si:busm1-104n07.3-001) 37480049-37482114 protein_coding
ENSDARG00000074816 (si:zfos-367g9.1)
si:zfos-367g9.1 		ENSDART00000109439 (si:zfos-367g9.1-001) 37465644-37474349 protein_coding
CIL_0001PL_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079593-ENSDARG00000088872 CGP 7955 8:45768098-45774524
GeneTranscriptPositionBiotype
ENSDARG00000079593 (si:busm1-228j01.5)
si:busm1-228j01.5 		ENSDART00000061132 (si:busm1-228j01.5-201) 45768098-45769605 protein_coding
ENSDARG00000088872 (si:busm1-228j01.4)
si:busm1-228j01.4 		ENSDART00000123658 (si:busm1-228j01.4-201) 45773380-45774524 protein_coding
CIL_0001PL_0006 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196735-ENSG00000179344 CGP 9606 6:32628179-32668383
GeneTranscriptPositionBiotype
ENSG00000179344 (HLA-DQB1)
major histocompatibility complex, class II, DQ beta 1 		ENST00000374943 (HLA-DQB1-002) 32659467-32666684 protein_coding
ENST00000399079 (HLA-DQB1-004) 32659467-32666664 protein_coding
ENST00000399082 (HLA-DQB1-007) 32659467-32666652 protein_coding
ENST00000399084 (HLA-DQB1-003) 32659467-32668383 protein_coding
ENST00000434651 (HLA-DQB1-001) 32659467-32666694 protein_coding
ENST00000443574 (HLA-DQB1-010) 32659886-32662450 processed_transcript
ENST00000460185 (HLA-DQB1-009) 32659886-32660440 processed_transcript
ENST00000484729 (HLA-DQB1-008) 32660107-32666638 nonsense_mediated_decay
ENST00000487676 (HLA-DQB1-005) 32659467-32666638 retained_intron
ENSG00000196735 (HLA-DQA1)
major histocompatibility complex, class II, DQ alpha 1 		ENST00000343139 (HLA-DQA1-001) 32637357-32643652 protein_coding
ENST00000374949 (HLA-DQA1-009) 32637420-32643017 protein_coding
ENST00000395363 (HLA-DQA1-004) 32637401-32643652 protein_coding
ENST00000422863 (HLA-DQA1-010) 32628179-32637531 protein_coding
ENST00000460633 (HLA-DQA1-003) 32637431-32647062 retained_intron
ENST00000482745 (HLA-DQA1-002) 32637427-32643272 nonsense_mediated_decay
ENST00000496318 (HLA-DQA1-007) 32637406-32642981 protein_coding
ENSG00000223534 (HLA-DQB1-AS1)
HLA-DQB1 antisense RNA 1 		ENST00000419852 (HLA-DQB1-AS1-001) 32659880-32660729 antisense
CIL_0001PL_0007 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000204287-ENSG00000198502 CGP 9606 6:32439842-32530287
GeneTranscriptPositionBiotype
ENSG00000196301 (HLA-DRB9)
major histocompatibility complex, class II, DR beta 9 (pseudogene) 		ENST00000449413 (HLA-DRB9-001) 32459821-32473500 unprocessed_pseudogene
ENSG00000198502 (HLA-DRB5)
major histocompatibility complex, class II, DR beta 5 		ENST00000374975 (HLA-DRB5-001) 32517343-32530287 protein_coding
ENSG00000204287 (HLA-DRA)
major histocompatibility complex, class II, DR alpha 		ENST00000374982 (HLA-DRA-002) 32439878-32445046 protein_coding
ENST00000395388 (HLA-DRA-001) 32439842-32445046 protein_coding
CIL_0001PL_0008 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000231389-ENSG00000223865 CGP 9606 6:33064569-33087201
GeneTranscriptPositionBiotype
ENSG00000223865 (HLA-DPB1)
major histocompatibility complex, class II, DP beta 1 		ENST00000416804 (HLA-DPB1-002) 33080672-33087201 protein_coding
ENST00000418931 (HLA-DPB1-001) 33075926-33087201 protein_coding
ENST00000428835 (HLA-DPB1-008) 33080487-33085889 protein_coding
ENST00000469120 (HLA-DPB1-004) 33076010-33081232 retained_intron
ENST00000471184 (HLA-DPB1-006) 33080386-33084012 processed_transcript
ENST00000478189 (HLA-DPB1-009) 33080941-33083890 processed_transcript
ENST00000488575 (HLA-DPB1-005) 33080386-33084957 processed_transcript
ENST00000498038 (HLA-DPB1-007) 33080443-33085231 processed_transcript
ENSG00000224796 (RPL32P1)
ribosomal protein L32 pseudogene 1 		ENST00000439737 (RPL32P1-001) 33079451-33079860 processed_pseudogene
CIL_0001PL_0009 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000237541-ENSG00000232629 CGP 9606 6:32741342-32763534
GeneTranscriptPositionBiotype
ENSG00000237541 (HLA-DQA2)
major histocompatibility complex, class II, DQ alpha 2 		ENST00000374940 (HLA-DQA2-001) 32741342-32747215 protein_coding
CIL_0001PL_000A (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036594-ENSMUSG00000060586 CGP 10090 17:34282744-34316199
GeneTranscriptPositionBiotype
ENSMUSG00000036594 (H2-Aa)
histocompatibility 2, class II antigen A, alpha 		ENSMUST00000040655 (H2-Aa-001) 34282744-34287827 protein_coding
ENSMUST00000165139 (H2-Aa-003) 34283772-34287777 retained_intron
ENSMUST00000173944 (H2-Aa-002) 34286465-34287819 processed_transcript
ENSMUST00000174751 (H2-Aa-004) 34282765-34287791 protein_coding
ENSMUSG00000060586 (H2-Eb1)
histocompatibility 2, class II antigen E beta 		ENSMUST00000074557 (H2-Eb1-001) 34305877-34316199 protein_coding
ENSMUSG00000092415 (Gm20513)
predicted gene 20513 		ENSMUST00000174074 (Gm20513-001) 34293073-34305720 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001PL_0001ENSDARG00000031745ENSDART00000048448ENSDARG00000079105ENSDART00000111240CIL_0001PL_0002ENSDARG00000055441ENSDART00000077794ENSDARG00000055447ENSDART00000077802CIL_0001PL_0003ENSDARG00000070206ENSDART00000102847ENSDART00000140959ENSDARG00000076307ENSDART00000108538CIL_0001PL_0004ENSDARG00000074510ENSDART00000097932ENSDART00000148323ENSDARG00000074816ENSDART00000109439CIL_0001PL_0005ENSDARG00000079593ENSDART00000061132ENSDARG00000088872ENSDART00000123658CIL_0001PL_0006ENSG00000179344ENST00000374943ENST00000399079ENST00000399082ENST00000399084ENST00000434651ENST00000443574ENST00000460185ENST00000484729ENST00000487676ENSG00000196735ENST00000343139ENST00000374949ENST00000395363ENST00000422863ENST00000460633ENST00000482745ENST00000496318ENSG00000223534ENST00000419852CIL_0001PL_0007ENSG00000196301ENST00000449413ENSG00000198502ENST00000374975ENSG00000204287ENST00000374982ENST00000395388CIL_0001PL_0008ENSG00000223865ENST00000416804ENST00000418931ENST00000428835ENST00000469120ENST00000471184ENST00000478189ENST00000488575ENST00000498038ENSG00000224796ENST00000439737CIL_0001PL_0009ENSG00000237541ENST00000374940CIL_0001PL_000AENSMUSG00000036594ENSMUST00000040655ENSMUST00000165139ENSMUST00000173944ENSMUST00000174751ENSMUSG00000060586ENSMUST00000074557ENSMUSG00000092415ENSMUST00000174074
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001PL_0001ENSDARG00000031745ENSDART00000048448ENSDARG00000079105ENSDART00000111240CIL_0001PL_0002ENSDARG00000055441ENSDART00000077794ENSDARG00000055447ENSDART00000077802CIL_0001PL_0003ENSDARG00000070206ENSDART00000102847ENSDART00000140959ENSDARG00000076307ENSDART00000108538CIL_0001PL_0004ENSDARG00000074510ENSDART00000097932ENSDART00000148323ENSDARG00000074816ENSDART00000109439CIL_0001PL_0005ENSDARG00000079593ENSDART00000061132ENSDARG00000088872ENSDART00000123658CIL_0001PL_0006ENSG00000179344ENST00000374943ENST00000399079ENST00000434651ENST00000460185ENST00000484729ENST00000487676ENSG00000196735ENST00000343139ENST00000374949ENST00000395363ENST00000460633ENST00000496318ENSG00000223534ENST00000419852CIL_0001PL_0007ENSG00000196301ENST00000449413ENSG00000198502ENST00000374975ENSG00000204287ENST00000374982ENST00000395388CIL_0001PL_0008ENSG00000223865ENST00000416804ENST00000418931ENST00000428835ENST00000488575ENSG00000224796ENST00000439737CIL_0001PL_0009ENSG00000237541ENST00000374940CIL_0001PL_000AENSMUSG00000036594ENSMUST00000040655ENSMUST00000174751ENSMUSG00000060586ENSMUST00000074557ENSMUSG00000092415ENSMUST00000174074
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000031745 ENSDART00000048448 N/A N/A N/A 15.175±3.88 N/A N/A 66.188±18.44 76.493±24.14 2.454±0.00 N/A 18.965±0.00 N/A N/A N/A
ENSDARG00000079105 ENSDART00000111240 N/A N/A N/A 20.691±4.91 N/A N/A 87.749±34.12 54.477±11.58 3.483±0.00 N/A 12.037±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055441 ENSDART00000077794 N/A N/A N/A 1.899±0.83 N/A N/A 1.202±0.00 5.933±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000055447 ENSDART00000077802 N/A N/A N/A 0.668±0.40 N/A N/A 2.704±2.32 6.829±2.34 0.051±0.00 N/A 0.074±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070206 ENSDART00000102847 N/A N/A N/A 0.387±0.07 N/A N/A 0.249±0.00 0.772±0.29 N/A N/A N/A N/A N/A N/A
ENSDART00000140959 N/A N/A N/A N/A N/A N/A 0.167±0.00 N/A N/A N/A 0.106±0.00 N/A N/A N/A
ENSDARG00000076307 ENSDART00000108538 N/A N/A N/A N/A N/A N/A 0.391±0.30 1.014±0.54 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000074510 ENSDART00000097932 N/A N/A N/A 0.249±0.04 N/A N/A 0.173±0.15 0.872±0.38 0.062±0.00 N/A N/A N/A N/A N/A
ENSDART00000148323 N/A N/A N/A N/A N/A N/A N/A 0.735±0.17 N/A N/A N/A N/A N/A N/A
ENSDARG00000074816 ENSDART00000109439 N/A N/A N/A 0.076±0.00 N/A N/A N/A 0.472±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000079593 ENSDART00000061132 N/A N/A N/A N/A N/A N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000088872 ENSDART00000123658 N/A N/A N/A 0.103±0.00 N/A N/A 0.545±0.00 0.343±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000179344 ENST00000374943 N/A N/A N/A 0.087±0.00 4.814±0.00 N/A N/A 1.177±0.00 N/A 5.928±0.00 N/A N/A 2.947±0.00 N/A
ENST00000399079 N/A N/A N/A 1.097±0.00 1.614±0.00 0.795±0.00 3.635±0.00 N/A 0.842±0.49 29.908±0.00 N/A 1.241±0.00 3.569±0.00 N/A
ENST00000399082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434651 1.686±0.00 29.126±0.00 N/A 2.466±0.00 N/A 0.333±0.00 0.451±0.00 11.297±0.00 0.350±0.00 N/A 4.653±0.00 9.568±7.93 2.255±0.65 4.975±0.00
ENST00000443574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460185 N/A N/A N/A 0.814±0.00 19.460±0.00 1.688±0.07 N/A 4.873±0.00 N/A 12.306±0.00 N/A 5.475±2.90 14.240±3.14 N/A
ENST00000484729 17.510±0.00 115.250±0.00 N/A 3.945±3.83 16.123±8.17 2.262±2.05 13.068±0.00 9.450±8.33 4.383±0.00 80.160±77.28 5.021±0.01 7.103±5.99 4.673±0.00 9.226±9.00
ENST00000487676 N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.340±0.00 0.490±0.00 N/A 0.153±0.00 N/A 0.048±0.00
ENSG00000196735 ENST00000343139 2.969±0.00 9.832±0.00 1.115±0.00 0.505±0.39 5.076±1.60 1.208±0.94 1.561±0.79 2.945±1.18 0.572±0.00 45.296±27.78 2.644±0.00 2.431±1.90 10.654±4.99 2.300±0.00
ENST00000374949 N/A 16.196±0.00 N/A N/A N/A 0.262±0.00 N/A 2.677±0.00 0.304±0.00 N/A N/A N/A N/A 1.049±0.00
ENST00000395363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.424±0.00
ENST00000422863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460633 0.124±0.00 3.775±0.00 0.331±0.00 N/A 1.315±0.00 N/A 0.168±0.00 0.171±0.02 0.139±0.00 1.649±0.00 0.072±0.00 0.062±0.01 0.111±0.00 0.096±0.08
ENST00000482745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496318 5.373±0.00 19.121±0.00 2.867±0.00 2.378±1.84 17.621±8.89 0.437±0.00 3.511±2.49 7.671±3.12 2.044±1.40 63.251±14.60 3.481±0.95 6.284±3.57 5.665±2.18 3.060±0.00
ENSG00000223534 ENST00000419852 6.199±0.00 48.607±0.00 N/A 0.309±0.00 4.992±0.00 1.004±0.60 3.316±2.97 4.165±2.36 1.422±0.00 37.434±32.23 2.587±0.00 2.775±1.83 5.496±2.62 2.722±2.60
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196301 ENST00000449413 N/A 0.156±0.00 N/A 0.461±0.00 0.255±0.00 0.077±0.00 N/A 0.341±0.00 N/A 0.165±0.00 N/A N/A N/A 0.147±0.00
ENSG00000198502 ENST00000374975 20.748±0.00 95.013±0.00 4.939±0.00 8.567±0.00 22.585±0.21 9.241±0.00 27.181±26.70 56.145±54.00 3.992±1.02 130.601±130.29 5.688±1.13 17.197±18.70 40.577±22.40 4.342±3.07
ENSG00000204287 ENST00000374982 13.563±0.00 117.425±0.00 N/A 13.014±0.00 35.002±0.00 N/A 7.297±4.91 N/A 4.144±0.00 312.410±0.00 6.277±2.55 37.382±0.00 63.017±0.00 10.323±1.99
ENST00000395388 99.401±0.00 480.583±0.00 18.623±0.00 50.186±41.23 111.751±36.72 51.385±7.89 44.756±28.87 130.270±76.57 31.405±14.81 546.621±301.67 21.530±7.80 104.238±60.47 140.523±56.13 50.414±30.91
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000223865 ENST00000416804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.994±0.00 N/A N/A N/A
ENST00000418931 35.433±0.00 173.370±0.00 6.476±0.00 8.435±6.43 37.670±22.90 11.915±7.47 9.862±5.62 16.045±7.37 6.425±3.60 48.926±0.00 3.129±0.00 21.239±18.47 13.836±0.00 11.384±7.24
ENST00000428835 81.863±0.00 N/A 9.799±0.00 3.250±0.00 25.079±0.00 23.923±6.13 5.412±0.00 60.739±0.00 12.212±3.58 44.360±0.00 10.020±3.42 10.256±0.00 N/A 43.278±0.00
ENST00000469120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.795±0.00
ENST00000498038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224796 ENST00000439737 0.037±0.00 2.743±0.00 N/A 0.202±0.00 0.316±0.00 0.676±0.00 0.172±0.00 0.387±0.00 N/A 0.257±0.00 N/A 0.216±0.02 0.109±0.04 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000237541 ENST00000374940 0.956±0.00 7.610±0.00 0.047±0.00 0.420±0.35 1.981±0.77 0.389±0.07 0.873±0.17 2.358±0.08 0.297±0.02 7.332±2.73 N/A 2.273±1.92 2.091±0.48 0.424±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036594 ENSMUST00000040655 241.157±34.70 106.399±15.91 124.138±2.45 0.238±0.10 700.966±55.31 133.406±13.04 43.716±16.69 106.220±17.18 17.824±16.86 330.991±59.48 12.301±14.69 132.489±19.90 4.784±8.85 4.335±2.02
ENSMUST00000165139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.599±6.32 63.662±2.93 0.482±0.16 N/A
ENSMUSG00000060586 ENSMUST00000074557 142.042±15.13 46.756±3.23 104.758±4.85 0.481±0.21 346.083±25.67 83.141±3.07 30.137±12.17 77.564±12.94 11.018±10.64 163.930±22.45 11.507±11.28 78.211±14.65 4.181±6.66 3.169±1.41
ENSMUSG00000092415 ENSMUST00000174074 0.097±0.00 N/A 0.072±0.01 N/A 0.343±0.15 0.237±0.01 0.090±0.00 N/A N/A 0.182±0.00 0.086±0.00 0.170±0.00 0.088±0.00 0.333±0.14

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