C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: corepressor interacting with RBPJ, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461454 CIR1-005 ENSG00000138433 9606 - 2:174378687-174395706 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000461454
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000461454 1.958±0.00 0.893±0.00 2.016±0.00 1.452±0.00 0.990±0.00 1.874±0.00 4.502±0.00 0.572±0.00 2.286±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_00096H CIL_00096H_0001 VISTA 2:174031315-174632386
CIL_0008GI CIL_0008GI_0001 VISTA 2:174038535-174640167
CIL_0008K2 CIL_0008K2_0001 VISTA 2:174042582-174643514
CIL_0001HA CIL_0001HA_0001 CGP 2:174334946-174395715
CIL_0003IH CIL_0003IH_0002 CGP 2:174348022-174429575

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058615 Cir1-001 protein_coding Mus_musculus 0 664
ENSMUST00000117547 Gm13803-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000118681 Gm2810-001 processed_pseudogene Mus_musculus 0 198

Loading