C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000456213}
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461548 RP4-734P14.4-001 ENSG00000256566 9606 - 20:2467212-2508907 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLungENST00000461548
Transcript ID Bladder Heart Lung
ENST00000461548 1.301±0.00 0.852±0.00 2.197±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FT CIL_0000FT_0001 CGP 20:2380908-2470853
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005622 IEA intracellular
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147570 Snrpb-002 processed_transcript Mus_musculus 0 392
ENSMUST00000139225 Snrpb-003 retained_intron Mus_musculus 0 379
ENSMUST00000150835 Snrpb-004 retained_intron Mus_musculus 0 231
ENSMUST00000103199 Snrpb-001 protein_coding Mus_musculus 0 230
ENSMUST00000098402 Snrpn-202 protein_coding Mus_musculus 0 196
ENSMUST00000059305 Snrpn-201 protein_coding Mus_musculus 0 196
ENSMUST00000120366 Gm14881-001 processed_pseudogene Mus_musculus 9.99967e-42 174

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