C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000462710 SRRM1-004 ENSG00000133226 9606 + 1:24643293-24650086 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungOvaryENST00000462710
Transcript ID Brain Breast Colon Heart Liver Lung Ovary
ENST00000462710 2.214±0.20 3.408±0.00 3.674±0.00 1.388±0.00 4.676±0.00 6.382±0.00 6.147±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0001 VISTA 1:24547215-25148615
CIL_0002GR CIL_0002GR_0002 CGP 1:24631716-24844324

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134854 Srrm1-004 retained_intron Mus_musculus 0 2510
ENSMUST00000150619 Srrm1-007 retained_intron Mus_musculus 0 2479
ENSMUST00000134019 Srrm1-005 processed_transcript Mus_musculus 0 470
ENSMUST00000136342 Srrm1-015 protein_coding Mus_musculus 0 429
ENSMUST00000084846 Srrm1-001 protein_coding Mus_musculus 0 429
ENSMUST00000105861 Srrm1-003 protein_coding Mus_musculus 0 429
ENSMUST00000136409 Srrm1-006 nonsense_mediated_decay Mus_musculus 0 427
ENSMUST00000131373 Srrm1-008 protein_coding Mus_musculus 0 412
ENSMUST00000030613 Srrm1-002 protein_coding Mus_musculus 0 401

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