C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 7-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000463678 ATXN7L2-004 ENSG00000162650 9606 + 1:109483479-109492704 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartLungOvaryPlacentaENST00000463678
Transcript ID Adrenal Bladder Breast Colon Heart Lung Ovary Placenta
ENST00000463678 0.337±0.00 0.154±0.00 0.152±0.00 0.148±0.00 0.162±0.00 0.132±0.01 0.495±0.46 0.330±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283
CIL_000736 CIL_000736_0003 CGP 1:109466628-109492804
CIL_0006TZ CIL_0006TZ_0002 CGP 1:109483479-109502932

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102633 Atxn7l2-001 protein_coding Mus_musculus 0 3626
ENSMUST00000117784 Atxn7l2-004 protein_coding Mus_musculus 0 2902
ENSMUST00000119650 Atxn7l2-006 protein_coding Mus_musculus 0 2663
ENSMUST00000117409 Atxn7l2-005 protein_coding Mus_musculus 0 2165
ENSMUST00000141054 Atxn7l2-002 retained_intron Mus_musculus 0 1958
ENSMUST00000127157 Atxn7l2-003 protein_coding Mus_musculus 0 649

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