C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465957 HPS1-008 ENSG00000107521 9606 - 10:98442388-98446927 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartLungOvaryPlacentaENST00000465957
Transcript ID Bladder Breast Heart Lung Ovary Placenta
ENST00000465957 0.864±0.00 1.537±0.00 1.436±1.07 2.863±1.78 1.575±0.00 3.515±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054X CIL_00054X_0001 CGP 10:98383565-98446947
CIL_00054W CIL_00054W_0001 CGP 10:98416198-99235862

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026194 Hps1-009 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000162061 Hps1-005 protein_coding Mus_musculus 9e-38 161
ENSMUST00000159974 Hps1-004 retained_intron Mus_musculus 9e-38 161
ENSMUST00000069298 Hps1-003 protein_coding Mus_musculus 9e-38 161
ENSMUST00000160455 Hps1-002 protein_coding Mus_musculus 9e-38 161
ENSMUST00000162004 Hps1-001 protein_coding Mus_musculus 9e-38 161

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