C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 1 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159974 Hps1-004 ENSMUSG00000025188 10090 - 19:42755196-42779959 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159974
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159974 1.944±0.44 5.017±1.00 3.060±0.39 5.739±2.78 1.791±1.13 2.485±0.26 0.496±0.05 1.551±0.22 0.826±0.38 1.964±0.17 0.148±0.07 3.520±1.35 0.513±0.07 1.224±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054X CIL_00054X_0002 CGP 19:42725858-42779978
CIL_00054W CIL_00054W_0002 CGP 19:42755105-43388311

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325103 HPS1-009 protein_coding Homo_sapiens 0 1692
ENST00000338546 HPS1-010 protein_coding Homo_sapiens 0 809
ENST00000359632 HPS1-013 protein_coding Homo_sapiens 0 682
ENST00000361490 HPS1-011 protein_coding Homo_sapiens 0 1692
ENST00000462743 HPS1-005 processed_transcript Homo_sapiens 2e-36 156
ENST00000465957 HPS1-008 processed_transcript Homo_sapiens 9e-38 161
ENST00000467246 HPS1-012 processed_transcript Homo_sapiens 0 977
ENST00000474873 HPS1-007 processed_transcript Homo_sapiens 0 494
ENST00000480020 HPS1-002 processed_transcript Homo_sapiens 0 339
ENST00000497527 HPS1-006 processed_transcript Homo_sapiens 0 399
ENST00000498219 HPS1-003 processed_transcript Homo_sapiens 0 339
ENST00000613394 HPS1-201 protein_coding Homo_sapiens 0 1681

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