C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 1 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069298 Hps1-003 ENSMUSG00000025188 10090 - 19:42758081-42779965 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000069298
Transcript ID Adipose Bladder Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069298 1.193±0.24 1.324±0.00 1.569±0.05 0.114±0.00 0.730±0.12 0.997±0.04 0.111±0.03 2.635±0.81 0.427±0.11 0.443±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054X CIL_00054X_0002 CGP 19:42725858-42779978
CIL_00054W CIL_00054W_0002 CGP 19:42755105-43388311

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006996 IMP organelle organization
GO:0007596 IMP blood coagulation
GO:0016023 ISO cytoplasmic membrane-bounded vesicle
GO:0030318 IMP melanocyte differentiation
GO:0032816 IMP positive regulation of natural killer cell activation
GO:0033299 IMP secretion of lysosomal enzymes
GO:0043473 IMP pigmentation
GO:0048069 IMP eye pigmentation
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325103 HPS1-009 protein_coding Homo_sapiens 0 841
ENST00000338546 HPS1-010 protein_coding Homo_sapiens 0 771
ENST00000359632 HPS1-013 protein_coding Homo_sapiens 0 682
ENST00000361490 HPS1-011 protein_coding Homo_sapiens 0 841
ENST00000465957 HPS1-008 processed_transcript Homo_sapiens 9e-38 161
ENST00000467246 HPS1-012 processed_transcript Homo_sapiens 0 832
ENST00000474873 HPS1-007 processed_transcript Homo_sapiens 0 494
ENST00000480020 HPS1-002 processed_transcript Homo_sapiens 0 339
ENST00000497527 HPS1-006 processed_transcript Homo_sapiens 0 399
ENST00000498219 HPS1-003 processed_transcript Homo_sapiens 0 339
ENST00000613394 HPS1-201 protein_coding Homo_sapiens 0 830

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