C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm associated antigen 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468248 SPAG4-004 ENSG00000061656 9606 + 20:35617046-35619736 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonOvaryENST00000468248
Transcript ID Adipose Adrenal Brain Colon Ovary
ENST00000468248 0.586±0.00 4.465±0.00 0.262±0.00 0.052±0.00 0.590±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0005FU CIL_0005FU_0001 CGP 20:35615892-35664956

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125996 Spag4-003 retained_intron Mus_musculus 0 473
ENSMUST00000038860 Spag4-001 protein_coding Mus_musculus 0 453
ENSMUST00000133511 Spag4-002 retained_intron Mus_musculus 0 453
ENSMUST00000149139 Spag4-006 processed_transcript Mus_musculus 0 340
ENSMUST00000137966 Spag4-005 protein_coding Mus_musculus 0 315
ENSMUST00000136765 Spag4-004 retained_intron Mus_musculus 0 315

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