C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468822 SRRM1-009 ENSG00000133226 9606 + 1:24643275-24652514 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungENST00000468822
Transcript ID Breast Colon Heart Liver Lung
ENST00000468822 5.009±0.00 4.721±0.00 1.510±0.00 2.912±0.00 6.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0001 VISTA 1:24547215-25148615
CIL_0002GR CIL_0002GR_0002 CGP 1:24631716-24844324

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131373 Srrm1-008 protein_coding Mus_musculus 0 872
ENSMUST00000136342 Srrm1-015 protein_coding Mus_musculus 0 822
ENSMUST00000084846 Srrm1-001 protein_coding Mus_musculus 0 822
ENSMUST00000105861 Srrm1-003 protein_coding Mus_musculus 0 822
ENSMUST00000030613 Srrm1-002 protein_coding Mus_musculus 0 773
ENSMUST00000134019 Srrm1-005 processed_transcript Mus_musculus 0 451
ENSMUST00000134854 Srrm1-004 retained_intron Mus_musculus 0 429
ENSMUST00000150619 Srrm1-007 retained_intron Mus_musculus 0 398
ENSMUST00000136409 Srrm1-006 nonsense_mediated_decay Mus_musculus 0 335

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