C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470448 SPATA17-002 ENSG00000162814 9606 + 1:217631324-217774424 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000470448
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000470448 0.367±0.00 0.111±0.00 0.066±0.00 0.096±0.03 0.146±0.12 0.929±0.00 0.119±0.00 0.603±0.00 18.928±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JY CIL_0007JY_0001 UCNEbase 1:215651193-218349979
CIL_000994 CIL_000994_0001 VISTA 1:217292780-217894009

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027908 Spata17-201 protein_coding Mus_musculus 0 364
ENSMUST00000183819 Spata17-001 protein_coding Mus_musculus 0 364
ENSMUST00000110945 Spata17-003 protein_coding Mus_musculus 0 289

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