C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471205 RP11-215P8.1-001 ENSG00000243648 9606 + 5:134422838-134423335 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyMuscleOvaryPlacentaTestisENST00000471205
Transcript ID Adrenal Brain Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000471205 0.106±0.00 0.271±0.04 0.202±0.00 0.097±0.00 0.072±0.00 0.061±0.00 0.087±0.00 0.135±0.00 0.187±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629
CIL_0007JT CIL_0007JT_0001 UCNEbase 5:134390519-134524544
CIL_00062U CIL_00062U_0002 CGP 5:134402087-134583230

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178774 Rps10-201 protein_coding Mus_musculus 0 518
ENSMUST00000114881 Rps10-003 protein_coding Mus_musculus 0 518
ENSMUST00000114882 Rps10-001 protein_coding Mus_musculus 0 518
ENSMUST00000127484 Rps10-ps2-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000074353 Rps10-ps1-201 protein_coding Mus_musculus 0 496
ENSMUST00000155071 Rps10-006 processed_transcript Mus_musculus 0 472
ENSMUST00000145226 Rps10-004 retained_intron Mus_musculus 0 422
ENSMUST00000025052 Rps10-002 protein_coding Mus_musculus 0 422
ENSMUST00000120308 Rps10-ps4-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000152982 Rps10-007 processed_transcript Mus_musculus 0 318
ENSMUST00000150763 Rps10-005 retained_intron Mus_musculus 0 220

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