C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474644 COL1A1-002 ENSG00000108821 9606 - 17:50199278-50201632 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungMuscleOvaryENST00000474644
Transcript ID Breast Colon Heart Liver Lung Muscle Ovary
ENST00000474644 60.357±0.00 17.682±0.00 3.852±0.00 47.494±0.00 10.120±0.00 11.996±0.00 97.885±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X4 CIL_0004X4_0002 CGP 17:50164214-50201632

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001547 Col1a1-001 protein_coding Mus_musculus 0 283

Loading