C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004X4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074156-ENSDARG00000035809 CGP 7955 12:3669968-3725230
GeneTranscriptPositionBiotype
ENSDARG00000035809 (col1a1b)
collagen, type I, alpha 1b 		ENSDART00000015092 (col1a1b-001) 3687446-3725230 protein_coding
ENSDARG00000074156 (sgca)
sarcoglycan, alpha 		ENSDART00000110958 (sgca-201) 3673349-3684094 protein_coding
ENSDART00000148835 (sgca-002) 3669968-3684474 protein_coding
ENSDART00000149427 (sgca-001) 3669970-3684771 protein_coding
CIL_0004X4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108823-ENSG00000108821 CGP 9606 17:50164214-50201632
GeneTranscriptPositionBiotype
ENSG00000108821 (COL1A1)
collagen, type I, alpha 1 		ENST00000225964 (COL1A1-001) 50183289-50201632 protein_coding
ENST00000463440 (COL1A1-005) 50193486-50194352 retained_intron
ENST00000471344 (COL1A1-006) 50193550-50195665 retained_intron
ENST00000474644 (COL1A1-002) 50199278-50201632 retained_intron
ENST00000476387 (COL1A1-007) 50190909-50194058 retained_intron
ENST00000485870 (COL1A1-004) 50196079-50196595 retained_intron
ENST00000486572 (COL1A1-009) 50187607-50188554 retained_intron
ENST00000494334 (COL1A1-008) 50190309-50190924 retained_intron
ENST00000495677 (COL1A1-003) 50196520-50198702 retained_intron
ENST00000504289 (COL1A1-014) 50191866-50192439 retained_intron
ENST00000507689 (COL1A1-013) 50199289-50200191 protein_coding
ENST00000510710 (COL1A1-018) 50185844-50187122 retained_intron
ENST00000511732 (COL1A1-016) 50187892-50188784 retained_intron
ENSG00000108823 (SGCA)
sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) 		ENST00000262018 (SGCA-001) 50166005-50175931 protein_coding
ENST00000344627 (SGCA-002) 50166005-50175928 protein_coding
ENST00000502555 (SGCA-004) 50166009-50169979 nonsense_mediated_decay
ENST00000504073 (SGCA-011) 50168522-50175914 protein_coding
ENST00000505964 (SGCA-012) 50175173-50175928 retained_intron
ENST00000508382 (SGCA-013) 50172405-50175900 processed_transcript
ENST00000511303 (SGCA-008) 50166045-50175928 protein_coding
ENST00000512526 (SGCA-010) 50167581-50175387 nonsense_mediated_decay
ENST00000513821 (SGCA-003) 50166004-50175797 nonsense_mediated_decay
ENST00000513942 (SGCA-005) 50164214-50175850 processed_transcript
ENST00000514934 (SGCA-006) 50165985-50168570 nonsense_mediated_decay
ENSG00000188662 (HILS1)
histone linker H1 domain, spermatid-specific 1, pseudogene 		ENST00000504307 (HILS1-003) 50171428-50181178 processed_transcript
ENST00000545329 (HILS1-001) 50171514-50171936 unitary_pseudogene
ENSG00000261959 (RP11-893F2.14)
 ENST00000572855 (RP11-893F2.14-001) 50163523-50165316 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004X4_0001ENSDARG00000035809ENSDART00000015092ENSDARG00000074156ENSDART00000110958ENSDART00000148835ENSDART00000149427CIL_0004X4_0002ENSG00000108821ENST00000225964ENST00000463440ENST00000471344ENST00000474644ENST00000476387ENST00000485870ENST00000486572ENST00000494334ENST00000495677ENST00000504289ENST00000507689ENST00000510710ENST00000511732ENSG00000108823ENST00000262018ENST00000344627ENST00000502555ENST00000504073ENST00000505964ENST00000508382ENST00000511303ENST00000512526ENST00000513821ENST00000513942ENST00000514934ENSG00000188662ENST00000504307ENST00000545329ENSG00000261959ENST00000572855
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004X4_0001ENSDARG00000035809ENSDART00000015092ENSDARG00000074156ENSDART00000110958ENSDART00000148835ENSDART00000149427CIL_0004X4_0002ENSG00000108821ENST00000225964ENST00000474644ENST00000476387ENST00000510710ENSG00000108823ENST00000262018ENST00000344627ENST00000502555ENST00000504073ENST00000505964ENST00000508382ENST00000512526ENST00000513821ENST00000513942ENSG00000188662ENST00000504307ENST00000545329ENSG00000261959ENST00000572855
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035809 ENSDART00000015092 N/A N/A N/A 0.873±0.36 N/A N/A 12.777±12.75 15.040±4.55 0.290±0.00 N/A 39.740±0.00 N/A N/A N/A
ENSDARG00000074156 ENSDART00000110958 N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A
ENSDART00000148835 N/A N/A N/A N/A N/A N/A 103.192±10.22 1.912±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000149427 N/A N/A N/A 0.710±0.17 N/A N/A 15.322±8.75 1.087±0.26 N/A N/A 7.655±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108821 ENST00000225964 23.475±0.00 75.399±0.00 1.109±0.00 0.347±0.30 68.980±35.16 8.311±0.00 4.391±3.52 N/A 13.830±3.10 12.012±10.65 1.122±0.73 280.501±357.09 379.113±62.41 52.524±37.34
ENST00000463440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474644 N/A N/A N/A N/A 60.357±0.00 17.682±0.00 3.852±0.00 N/A 47.494±0.00 10.120±0.00 11.996±0.00 97.885±0.00 N/A N/A
ENST00000476387 N/A N/A N/A 0.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.106±0.00 319.172±0.00 923.092±0.00 23.877±0.00
ENST00000511732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108823 ENST00000262018 1.314±0.00 6.612±0.00 N/A 0.145±0.00 2.498±1.25 9.778±9.51 12.594±9.08 0.556±0.00 1.188±1.02 18.368±0.00 97.851±72.16 1.684±1.09 1.925±1.12 7.469±0.00
ENST00000344627 0.954±0.00 3.496±0.00 N/A N/A 1.185±0.00 N/A 7.802±5.63 0.477±0.00 1.204±0.00 N/A 6.296±0.00 1.146±0.41 1.522±0.86 6.140±0.00
ENST00000502555 N/A N/A N/A N/A N/A 0.167±0.00 1.244±0.00 N/A 1.259±0.00 N/A 6.101±0.00 0.048±0.00 N/A 1.735±0.00
ENST00000504073 N/A N/A N/A N/A 2.186±0.00 N/A N/A 0.521±0.00 N/A N/A N/A N/A N/A N/A
ENST00000505964 N/A N/A N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508382 N/A N/A N/A N/A N/A N/A N/A N/A 0.704±0.00 N/A N/A N/A N/A N/A
ENST00000511303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512526 N/A 4.301±0.00 N/A N/A N/A 17.816±0.00 N/A N/A 0.247±0.00 N/A N/A N/A N/A N/A
ENST00000513821 N/A N/A N/A N/A 1.880±0.00 N/A N/A N/A N/A 1.420±0.00 93.328±0.00 2.033±0.00 1.387±0.68 N/A
ENST00000513942 N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188662 ENST00000504307 0.017±0.00 0.075±0.00 N/A 0.110±0.00 0.040±0.00 0.462±0.38 0.090±0.00 N/A 0.100±0.00 0.090±0.00 1.152±0.00 0.153±0.00 0.070±0.01 1.385±0.14
ENST00000545329 N/A 0.335±0.00 N/A 0.390±0.00 N/A N/A N/A N/A N/A N/A 0.362±0.00 0.158±0.00 0.185±0.00 3.763±0.00
ENSG00000261959 ENST00000572855 N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.126±0.00

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