C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474817 ARHGEF5-002 ENSG00000050327 9606 + 7:144364909-144380631 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000474817
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000474817 1.726±0.00 1.104±0.00 0.504±0.00 0.404±0.00 3.085±0.00 1.371±0.45 0.116±0.00 6.665±0.00 1.793±0.00 2.344±0.00 4.369±3.26 2.493±0.68 1.843±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074V CIL_00074V_0001 CGP 7:144318125-144380632
CIL_00074U CIL_00074U_0001 CGP 7:144355288-144410227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182924 Arhgef5-002 protein_coding Mus_musculus 0 2314
ENSMUST00000031750 Arhgef5-001 protein_coding Mus_musculus 0 1801
ENSMUST00000183094 Arhgef5-004 retained_intron Mus_musculus 0 974
ENSMUST00000182190 Arhgef5-005 retained_intron Mus_musculus 0 942
ENSMUST00000183313 Arhgef5-006 retained_intron Mus_musculus 0 514
ENSMUST00000183227 Arhgef5-003 retained_intron Mus_musculus 0 346
ENSMUST00000182752 Arhgef5-007 retained_intron Mus_musculus 0 342

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