C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: runt-related transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475045 RUNX1-013 ENSG00000159216 9606 - 21:34887046-36004667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000475045
Transcript ID Testis
ENST00000475045 1.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZS CIL_0008ZS_0001 VISTA 21:34243666-34847364
CIL_00094R CIL_00094R_0001 VISTA 21:34258399-34859715
CIL_00078F CIL_00078F_0001 CGP 21:34669389-36004667

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186296 Runx1-002 protein_coding Mus_musculus 6e-17 94
ENSMUST00000189126 Runx1-005 retained_intron Mus_musculus 6e-17 94
ENSMUST00000168195 Runx1-004 protein_coding Mus_musculus 6e-17 94
ENSMUST00000113956 Runx1-003 protein_coding Mus_musculus 6e-17 94
ENSMUST00000023673 Runx1-001 protein_coding Mus_musculus 6e-17 94
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00003 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00003 55

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