C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00078F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159212-ENSG00000159216 CGP 9606 21:34669389-36004667
GeneTranscriptPositionBiotype
ENSG00000159212 (CLIC6)
chloride intracellular channel 6 		ENST00000349499 (CLIC6-002) 34669389-34718227 protein_coding
ENST00000360731 (CLIC6-001) 34669389-34718227 protein_coding
ENSG00000159216 (RUNX1)
runt-related transcription factor 1 		ENST00000300305 (RUNX1-002) 34787801-35049344 protein_coding
ENST00000344691 (RUNX1-001) 34787801-34888690 protein_coding
ENST00000358356 (RUNX1-005) 34821279-34888690 protein_coding
ENST00000399237 (RUNX1-012) 34834410-34889790 protein_coding
ENST00000399240 (RUNX1-009) 34791786-34887183 protein_coding
ENST00000416754 (RUNX1-004) 34892925-35049270 protein_coding
ENST00000437180 (RUNX1-201) 34787801-35049298 protein_coding
ENST00000455571 (RUNX1-010) 34880606-35049298 protein_coding
ENST00000460207 (RUNX1-017) 35954660-35984749 processed_transcript
ENST00000467577 (RUNX1-008) 34856289-34859578 processed_transcript
ENST00000467692 (RUNX1-016) 35372507-35580760 processed_transcript
ENST00000468726 (RUNX1-014) 35064716-35065072 processed_transcript
ENST00000469087 (RUNX1-007) 34832961-34856447 retained_intron
ENST00000475045 (RUNX1-013) 34887046-36004667 protein_coding
ENST00000479325 (RUNX1-006) 34821279-34829970 processed_transcript
ENST00000482318 (RUNX1-003) 34791755-35049288 nonsense_mediated_decay
ENST00000494829 (RUNX1-015) 35435661-35465329 processed_transcript
ENSG00000223671 (RPL34P3)
ribosomal protein L34 pseudogene 3 		ENST00000421454 (RPL34P3-001) 35472095-35472432 processed_pseudogene
ENSG00000229761 (RPS20P1)
ribosomal protein S20 pseudogene 1 		ENST00000434853 (RPS20P1-001) 35724747-35725100 processed_pseudogene
ENSG00000230794 (AF015720.3)
 ENST00000412240 (AF015720.3-001) 35713139-35732942 lincRNA
ENSG00000230978 (LINC00160)
long intergenic non-protein coding RNA 160 		ENST00000430635 (LINC00160-001) 34723807-34737181 lincRNA
ENSG00000234008 (PPP1R2P2)
protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 2 		ENST00000440405 (PPP1R2P2-001) 35887195-35887807 processed_pseudogene
ENSG00000234380 (LINC01426)
long intergenic non-protein coding RNA 1426 		ENST00000419921 (LINC01426-002) 34745837-34748367 antisense
ENST00000420877 (LINC01426-001) 34745757-34784886 antisense
ENSG00000234703 (AF015262.2)
 ENST00000455028 (AF015262.2-001) 35136638-35139222 lincRNA
ENSG00000280170 (FKSG68)
 ENST00000624569 (FKSG68-201) 35898055-35898429 protein_coding
CIL_00078F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022949-ENSMUSG00000022952 CGP 10090 16:92485736-92826149
GeneTranscriptPositionBiotype
ENSMUSG00000022949 (Clic6)
chloride intracellular channel 6 		ENSMUST00000023670 (Clic6-001) 92498134-92541243 protein_coding
ENSMUST00000162181 (Clic6-002) 92485736-92528805 protein_coding
ENSMUSG00000022952 (Runx1)
runt related transcription factor 1 		ENSMUST00000023673 (Runx1-001) 92601466-92826149 protein_coding
ENSMUST00000113956 (Runx1-003) 92603656-92697328 protein_coding
ENSMUST00000168195 (Runx1-004) 92605398-92696125 protein_coding
ENSMUST00000186296 (Runx1-002) 92695592-92825778 protein_coding
ENSMUST00000187242 (Runx1-007) 92686956-92695495 protein_coding
ENSMUST00000189126 (Runx1-005) 92686989-92697325 retained_intron
ENSMUST00000189679 (Runx1-006) 92815428-92826074 protein_coding
ENSMUSG00000051297 (2410124H12Rik)
RIKEN cDNA 2410124H12 gene 		ENSMUST00000160494 (2410124H12Rik-001) 92478742-92497366 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078F_0001ENSG00000159212ENST00000349499ENST00000360731ENSG00000159216ENST00000300305ENST00000344691ENST00000358356ENST00000399237ENST00000399240ENST00000416754ENST00000437180ENST00000455571ENST00000460207ENST00000467577ENST00000467692ENST00000468726ENST00000469087ENST00000475045ENST00000479325ENST00000482318ENST00000494829ENSG00000223671ENST00000421454ENSG00000229761ENST00000434853ENSG00000230794ENST00000412240ENSG00000230978ENST00000430635ENSG00000234008ENST00000440405ENSG00000234380ENST00000419921ENST00000420877ENSG00000234703ENST00000455028ENSG00000280170ENST00000624569CIL_00078F_0002ENSMUSG00000022949ENSMUST00000023670ENSMUST00000162181ENSMUSG00000022952ENSMUST00000023673ENSMUST00000113956ENSMUST00000168195ENSMUST00000186296ENSMUST00000187242ENSMUST00000189126ENSMUST00000189679ENSMUSG00000051297ENSMUST00000160494
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078F_0001ENSG00000159212ENST00000349499ENST00000360731ENSG00000159216ENST00000300305ENST00000344691ENST00000358356ENST00000437180ENST00000467577ENST00000469087ENST00000475045ENSG00000223671ENST00000421454ENSG00000229761ENST00000434853ENSG00000230794ENST00000412240ENSG00000230978ENST00000430635ENSG00000234008ENST00000440405ENSG00000234380ENST00000419921ENST00000420877ENSG00000234703ENST00000455028ENSG00000280170ENST00000624569CIL_00078F_0002ENSMUSG00000022949ENSMUST00000023670ENSMUST00000162181ENSMUSG00000022952ENSMUST00000023673ENSMUST00000113956ENSMUST00000168195ENSMUST00000187242ENSMUST00000189126ENSMUST00000189679ENSMUSG00000051297ENSMUST00000160494
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000159212 ENST00000349499 2.940±0.00 0.790±0.00 0.140±0.00 0.987±0.80 1.540±1.05 0.388±0.25 1.514±1.46 2.133±0.00 0.569±0.35 4.460±3.88 0.649±0.00 4.106±2.18 0.131±0.07 0.818±0.56
ENST00000360731 N/A N/A N/A N/A N/A N/A 1.783±0.00 N/A N/A N/A 0.158±0.00 N/A N/A N/A
ENSG00000159216 ENST00000300305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00 N/A N/A N/A
ENST00000344691 5.159±0.00 3.003±0.00 0.765±0.00 0.694±0.58 3.110±0.56 1.304±0.15 0.448±0.22 0.263±0.15 0.374±0.08 4.448±1.93 0.874±0.58 3.550±1.09 3.041±0.68 0.574±0.26
ENST00000358356 N/A N/A N/A N/A 2.554±0.00 N/A N/A 1.303±0.00 1.519±0.00 N/A N/A 2.530±0.00 N/A N/A
ENST00000399237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.102±0.00 N/A N/A
ENST00000455571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467577 N/A N/A N/A N/A N/A N/A N/A 8.147±0.00 N/A N/A N/A N/A N/A N/A
ENST00000467692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469087 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.017±0.00
ENST00000479325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223671 ENST00000421454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00
ENSG00000229761 ENST00000434853 0.037±0.00 N/A N/A N/A 0.849±0.00 N/A N/A 0.240±0.00 N/A N/A 0.035±0.00 0.201±0.00 N/A 0.303±0.00
ENSG00000230794 ENST00000412240 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.612±0.00 N/A N/A N/A 0.050±0.01
ENSG00000230978 ENST00000430635 0.022±0.00 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 0.776±0.00 N/A 0.125±0.09 0.048±0.01
ENSG00000234008 ENST00000440405 N/A N/A N/A 0.092±0.00 N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A 6.025±4.93
ENSG00000234380 ENST00000419921 N/A 0.521±0.00 N/A 0.196±0.00 0.192±0.00 0.236±0.02 0.093±0.00 0.231±0.00 0.135±0.00 0.258±0.14 0.108±0.00 0.142±0.04 0.021±0.00 0.125±0.02
ENST00000420877 0.155±0.00 0.153±0.00 0.272±0.00 0.048±0.00 0.087±0.03 0.172±0.00 0.056±0.00 0.112±0.00 0.097±0.00 0.082±0.00 0.082±0.00 0.160±0.11 0.131±0.06 0.092±0.06
ENSG00000234703 ENST00000455028 N/A 0.068±0.00 N/A N/A 0.069±0.00 N/A 0.041±0.00 N/A N/A N/A N/A 0.237±0.18 N/A 0.058±0.00
ENSG00000280170 ENST00000624569 N/A 0.043±0.00 0.951±0.00 0.230±0.00 0.086±0.00 0.276±0.20 N/A 0.383±0.00 0.196±0.01 N/A 0.074±0.00 0.672±0.00 0.404±0.24 1.666±1.28
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022949 ENSMUST00000023670 0.485±0.16 0.134±0.07 0.123±0.00 3.344±1.00 1.466±0.38 7.783±1.21 0.270±0.26 2.114±0.31 0.179±0.12 6.589±0.27 0.040±0.03 0.542±0.17 6.629±8.12 0.615±0.24
ENSMUST00000162181 N/A N/A N/A N/A N/A N/A 0.142±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022952 ENSMUST00000023673 0.693±0.13 0.200±0.05 N/A 0.033±0.00 2.238±0.91 0.795±0.20 0.112±0.06 0.104±0.02 0.479±0.48 2.806±0.42 0.118±0.04 1.130±0.28 0.143±0.05 0.035±0.02
ENSMUST00000113956 0.578±0.26 0.591±0.17 0.903±0.00 N/A 4.449±0.20 1.042±0.22 0.089±0.01 0.125±0.00 0.036±0.01 2.742±1.04 0.060±0.01 3.982±1.35 0.221±0.02 0.057±0.02
ENSMUST00000168195 0.643±0.13 0.696±0.17 N/A 0.176±0.07 7.763±3.60 2.194±0.60 0.311±0.20 0.328±0.14 0.821±0.90 4.350±0.96 0.182±0.00 5.533±1.53 0.814±0.48 0.108±0.05
ENSMUST00000186296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187242 N/A N/A N/A N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A N/A N/A
ENSMUST00000189126 N/A N/A N/A 0.014±0.00 N/A N/A 0.060±0.00 N/A 0.023±0.00 N/A N/A N/A N/A 0.062±0.01
ENSMUST00000189679 N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A 0.049±0.00
ENSMUSG00000051297 ENSMUST00000160494 N/A N/A 0.028±0.01 0.175±0.02 N/A 0.105±0.00 0.053±0.00 0.057±0.00 N/A N/A N/A N/A 0.380±0.20 N/A

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