C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: runt related transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113956 Runx1-003 ENSMUSG00000022952 10090 - 16:92603656-92697328 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113956
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113956 0.578±0.26 0.591±0.17 0.903±0.00 4.449±0.20 1.042±0.22 0.089±0.01 0.125±0.00 0.036±0.01 2.742±1.04 0.060±0.01 3.982±1.35 0.221±0.02 0.057±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ON CIL_0008ON_0002 VISTA 16:92040534-92642015
CIL_0007SX CIL_0007SX_0002 VISTA 16:92042784-92648394
CIL_0008OM CIL_0008OM_0002 VISTA 16:92044467-92645647
CIL_0008ZS CIL_0008ZS_0002 VISTA 16:92110151-92716672
CIL_00094R CIL_00094R_0002 VISTA 16:92127453-92730131
CIL_00078F CIL_00078F_0002 CGP 16:92485736-92826149

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001701 IMP in utero embryonic development
GO:0001889 IMP liver development
GO:0002318 IMP myeloid progenitor cell differentiation
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005604 IDA basement membrane
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007417 IMP central nervous system development
GO:0009966 IMP regulation of signal transduction
GO:0030182 IMP neuron differentiation
GO:0031069 IMP hair follicle morphogenesis
GO:0035162 IMP embryonic hemopoiesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048266 IMP behavioral response to pain
GO:0048666 IMP neuron development
GO:0060216 IMP definitive hemopoiesis
GO:0070491 IPI repressing transcription factor binding
GO:0071336 IMP regulation of hair follicle cell proliferation
GO:0071560 IDA cellular response to transforming growth factor beta stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130697 RUNX1 (2 of 2)-201 protein_coding Danio_rerio 0 267
ENST00000300305 RUNX1-002 protein_coding Homo_sapiens 0 811
ENST00000308873 RUNX3-001 protein_coding Homo_sapiens 0 316
ENST00000338888 RUNX3-002 protein_coding Homo_sapiens 0 316
ENST00000344691 RUNX1-001 protein_coding Homo_sapiens 0 905
ENST00000358356 RUNX1-005 protein_coding Homo_sapiens 0 905
ENST00000399237 RUNX1-012 protein_coding Homo_sapiens 0 701
ENST00000399240 RUNX1-009 protein_coding Homo_sapiens 0 1644
ENST00000399916 RUNX3-201 protein_coding Homo_sapiens 0 316
ENST00000437180 RUNX1-201 protein_coding Homo_sapiens 0 811
ENST00000455571 RUNX1-010 protein_coding Homo_sapiens 0 529
ENST00000475045 RUNX1-013 protein_coding Homo_sapiens 6e-17 94
ENST00000482318 RUNX1-003 nonsense_mediated_decay Homo_sapiens 0 811

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