C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: runt related transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189126 Runx1-005 ENSMUSG00000022952 10090 - 16:92686989-92697325 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverTestisENSMUST00000189126
Transcript ID Brain Heart Liver Testis
ENSMUST00000189126 0.014±0.00 0.060±0.00 0.023±0.00 0.062±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ON CIL_0008ON_0002 VISTA 16:92040534-92642015
CIL_0007SX CIL_0007SX_0002 VISTA 16:92042784-92648394
CIL_0008OM CIL_0008OM_0002 VISTA 16:92044467-92645647
CIL_0008ZS CIL_0008ZS_0002 VISTA 16:92110151-92716672
CIL_00094R CIL_00094R_0002 VISTA 16:92127453-92730131
CIL_00078F CIL_00078F_0002 CGP 16:92485736-92826149

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130697 RUNX1 (2 of 2)-201 protein_coding Danio_rerio 0 268
ENST00000300305 RUNX1-002 protein_coding Homo_sapiens 0 575
ENST00000308873 RUNX3-001 protein_coding Homo_sapiens 0 259
ENST00000338888 RUNX3-002 protein_coding Homo_sapiens 0 259
ENST00000344691 RUNX1-001 protein_coding Homo_sapiens 0 582
ENST00000358356 RUNX1-005 protein_coding Homo_sapiens 0 582
ENST00000399237 RUNX1-012 protein_coding Homo_sapiens 0 575
ENST00000399240 RUNX1-009 protein_coding Homo_sapiens 0 575
ENST00000399916 RUNX3-201 protein_coding Homo_sapiens 0 259
ENST00000437180 RUNX1-201 protein_coding Homo_sapiens 0 575
ENST00000455571 RUNX1-010 protein_coding Homo_sapiens 0 527
ENST00000475045 RUNX1-013 protein_coding Homo_sapiens 6e-17 94

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