C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478219 COL13A1-009 ENSG00000197467 9606 + 10:69954901-69959142 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLungOvaryTestisENST00000478219
Transcript ID Adrenal Brain Breast Lung Ovary Testis
ENST00000478219 0.116±0.00 0.057±0.02 0.063±0.00 0.484±0.00 0.098±0.00 0.097±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0001 VISTA 10:69276019-69878973

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105454 Col13a1-001 protein_coding Mus_musculus 0 388
ENSMUST00000105452 Col13a1-005 protein_coding Mus_musculus 0 388
ENSMUST00000105453 Col13a1-004 protein_coding Mus_musculus 0 388
ENSMUST00000105451 Col13a1-003 processed_transcript Mus_musculus 0 388
ENSMUST00000145469 Col13a1-006 protein_coding Mus_musculus 0 388

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