C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478368 BAP1-014 ENSG00000163930 9606 - 3:52401816-52403647 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaTestisENST00000478368
Transcript ID Breast Ovary Placenta Testis
ENST00000478368 1.295±0.00 7.534±0.00 10.041±0.00 77.607±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190788 Bap1-002 retained_intron Mus_musculus 0 558
ENSMUST00000022458 Bap1-001 protein_coding Mus_musculus 0 558
ENSMUST00000185700 Bap1-008 retained_intron Mus_musculus 0 460
ENSMUST00000187156 Bap1-007 nonsense_mediated_decay Mus_musculus 0 348

Loading