C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SFT2 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478705 SFT2D1-004 ENSG00000198818 9606 - 6:166320156-166342576 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000478705
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000478705 10.597±0.00 8.828±0.00 9.379±3.94 8.633±2.69 9.263±0.00 3.827±0.00 7.667±5.32 2.899±0.00 11.277±0.00 1.285±0.00 70.441±0.00 25.201±0.00 11.168±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094V CIL_00094V_0001 VISTA 6:166171962-166774036

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000135627 Sft2d1-006 processed_transcript Mus_musculus 0 558
ENSMUST00000154553 Sft2d1-001 protein_coding Mus_musculus 0 446
ENSMUST00000093169 Gm12166-001 protein_coding Mus_musculus 0 446
ENSMUST00000153406 Sft2d1-007 retained_intron Mus_musculus 0 435
ENSMUST00000150728 Sft2d1-003 retained_intron Mus_musculus 0 342
ENSMUST00000145276 Sft2d1-002 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000154156 Gm12166-002 processed_transcript Mus_musculus 0 289
ENSMUST00000135964 Sft2d1-008 retained_intron Mus_musculus 0 287
ENSMUST00000130782 Sft2d1-004 nonsense_mediated_decay Mus_musculus 4.2039e-45 185

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