C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: STE20-related kinase adaptor beta pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478954 STRADBP1-001 ENSG00000213205 9606 - 7:150512559-150513839 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainLiverTestisENST00000478954
Transcript ID Adipose Adrenal Brain Liver Testis
ENST00000478954 0.010±0.00 0.030±0.00 0.010±0.00 0.009±0.00 0.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OC CIL_0004OC_0001 CGP 7:150450630-150521073

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027185 Stradb-001 protein_coding Mus_musculus 0 1395
ENSMUST00000153990 Stradb-003 nonsense_mediated_decay Mus_musculus 0 1315
ENSMUST00000123301 Stradb-002 nonsense_mediated_decay Mus_musculus 0 592
ENSMUST00000114296 Stradb-004 protein_coding Mus_musculus 0 545
ENSMUST00000152318 Stradb-008 protein_coding Mus_musculus 0 494

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