C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: STE20-related kinase adaptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027185 Stradb-001 ENSMUSG00000026027 10090 + 1:58973522-58995715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027185
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027185 3.807±0.77 0.632±0.07 3.552±1.18 2.929±0.81 1.526±0.34 3.482±1.48 3.569±0.88 2.948±1.00 1.319±0.65 4.984±0.00 1.861±0.47 1.491±0.30 2.300±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089O CIL_00089O_0002 VISTA 1:58652904-59256413
CIL_0000JJ CIL_0000JJ_0003 CGP 1:58900449-58995715
CIL_00020Q CIL_00020Q_0002 CGP 1:58973522-59094900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IDA cell morphogenesis
GO:0004672 IDA protein kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0006611 ISS protein export from nucleus
GO:0007010 TAS cytoskeleton organization
GO:0007049 IEA cell cycle
GO:0007254 IDA JNK cascade
GO:0032147 ISS activation of protein kinase activity
GO:2001240 IDA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194530 STRADB-001 protein_coding Homo_sapiens 0 1888
ENST00000392249 STRADB-003 protein_coding Homo_sapiens 0 1783
ENST00000412769 RP11-329A14.1-001 processed_pseudogene Homo_sapiens 0 1535
ENST00000415688 STRADB-009 protein_coding Homo_sapiens 0 390
ENST00000447698 STRADB-005 nonsense_mediated_decay Homo_sapiens 0 259
ENST00000458269 STRADB-006 protein_coding Homo_sapiens 0 815
ENST00000465990 SPATA6-009 processed_transcript Homo_sapiens 6e-30 134
ENST00000466770 STRADB-010 retained_intron Homo_sapiens 0 335
ENST00000468123 STRADB-008 retained_intron Homo_sapiens 0 534
ENST00000478954 STRADBP1-001 processed_pseudogene Homo_sapiens 0 1395
ENST00000484098 STRADB-011 retained_intron Homo_sapiens 0 658
ENST00000498648 STRADB-007 retained_intron Homo_sapiens 0 763

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