C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: STE20-related kinase adaptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123301 Stradb-002 ENSMUSG00000026027 10090 + 1:58973522-58994997 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123301
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123301 7.228±2.03 6.618±1.25 3.588±1.00 10.601±5.08 8.588±2.40 5.113±0.97 11.114±1.24 10.848±1.53 10.934±2.75 4.333±0.70 20.241±1.81 5.226±1.48 6.045±3.44 3.974±1.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089O CIL_00089O_0002 VISTA 1:58652904-59256413
CIL_0000JJ CIL_0000JJ_0003 CGP 1:58900449-58995715
CIL_00020Q CIL_00020Q_0002 CGP 1:58973522-59094900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IDA cell morphogenesis
GO:0004672 IDA protein kinase activity
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0006611 ISS protein export from nucleus
GO:0007010 TAS cytoskeleton organization
GO:0007049 IEA cell cycle
GO:0007254 IDA JNK cascade
GO:0032147 ISS activation of protein kinase activity
GO:2001240 IDA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194530 STRADB-001 protein_coding Homo_sapiens 0 813
ENST00000392249 STRADB-003 protein_coding Homo_sapiens 0 813
ENST00000412769 RP11-329A14.1-001 processed_pseudogene Homo_sapiens 0 640
ENST00000415688 STRADB-009 protein_coding Homo_sapiens 0 390
ENST00000447698 STRADB-005 nonsense_mediated_decay Homo_sapiens 0 259
ENST00000458269 STRADB-006 protein_coding Homo_sapiens 0 496
ENST00000465990 SPATA6-009 processed_transcript Homo_sapiens 6e-30 134
ENST00000466770 STRADB-010 retained_intron Homo_sapiens 0 335
ENST00000468123 STRADB-008 retained_intron Homo_sapiens 3e-37 159
ENST00000478954 STRADBP1-001 processed_pseudogene Homo_sapiens 0 592
ENST00000484098 STRADB-011 retained_intron Homo_sapiens 0 497
ENST00000498648 STRADB-007 retained_intron Homo_sapiens 0 333

Loading