C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valosin containing protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030164 Vcp-001 ENSMUSG00000028452 10090 - 4:42979963-43000507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030164 51.198±5.45 44.913±4.49 56.812±4.16 49.773±26.15 55.820±17.33 43.938±7.59 46.210±12.61 56.111±11.64 58.767±12.86 62.508±1.93 108.914±5.28 95.698±26.15 85.044±41.32 38.397±13.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PW CIL_0002PW_0002 CGP 4:42949814-42983640
CIL_0005SG CIL_0005SG_0002 CGP 4:42969604-43000507
CIL_0005SF CIL_0005SF_0002 CGP 4:42979963-43010506

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0000836 IEA Hrd1p ubiquitin ligase complex
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005811 IEA lipid particle
GO:0005829 ISS cytosol
GO:0006200 IEA ATP catabolic process
GO:0006302 ISS double-strand break repair
GO:0006511 IGI ubiquitin-dependent protein catabolic process
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0006919 IDA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008289 IEA lipid binding
GO:0016567 ISS protein ubiquitination
GO:0018279 ISS protein N-linked glycosylation via asparagine
GO:0019903 IEA protein phosphatase binding
GO:0019904 IEA protein domain specific binding
GO:0019985 ISS translesion synthesis
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0030970 ISS retrograde protein transport, ER to cytosol
GO:0031334 IEA positive regulation of protein complex assembly
GO:0031593 IDA polyubiquitin binding
GO:0032403 IEA protein complex binding
GO:0032436 IEA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034214 IEA protein hexamerization
GO:0035800 IEA deubiquitinase activator activity
GO:0035861 ISS site of double-strand break
GO:0042802 IEA identical protein binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IPI protein complex
GO:0043531 IEA ADP binding
GO:0044822 IEA poly(A) RNA binding
GO:0045732 IEA positive regulation of protein catabolic process
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051260 IEA protein homooligomerization
GO:0070062 IEA extracellular vesicular exosome
GO:0070842 IGI aggresome assembly
GO:1903006 IEA positive regulation of protein K63-linked deubiquitination
GO:1903007 IEA positive regulation of Lys63-specific deubiquitinase activity
GO:1990381 IEA ubiquitin-specific protease binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358901 VCP-001 protein_coding Homo_sapiens 0 4054
ENST00000417448 VCP-004 protein_coding Homo_sapiens 0 664
ENST00000448530 VCP-006 protein_coding Homo_sapiens 0 841
ENST00000466100 VCP-002 retained_intron Homo_sapiens 0 289
ENST00000479300 VCP-003 retained_intron Homo_sapiens 0 627
ENST00000480327 VCP-007 retained_intron Homo_sapiens 0 449
ENST00000493886 VCP-005 retained_intron Homo_sapiens 0 2294

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