C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005SG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174038-ENSG00000165280 CGP 9606 9:35041095-35073249
GeneTranscriptPositionBiotype
ENSG00000165280 (VCP)
valosin containing protein 		ENST00000358901 (VCP-001) 35056064-35073249 protein_coding
ENST00000417448 (VCP-004) 35065346-35072014 protein_coding
ENST00000448530 (VCP-006) 35064246-35072627 protein_coding
ENST00000466100 (VCP-002) 35057173-35057833 retained_intron
ENST00000479300 (VCP-003) 35059061-35059892 retained_intron
ENST00000480327 (VCP-007) 35059748-35061630 retained_intron
ENST00000493886 (VCP-005) 35056870-35072549 retained_intron
ENSG00000174038 (C9orf131)
chromosome 9 open reading frame 131 		ENST00000312292 (C9orf131-001) 35042208-35045991 protein_coding
ENST00000354479 (C9orf131-004) 35041095-35045982 protein_coding
ENST00000378745 (C9orf131-005) 35042213-35043502 protein_coding
ENST00000416537 (C9orf131-007) 35042472-35043337 nonsense_mediated_decay
ENST00000421362 (C9orf131-003) 35041095-35045982 protein_coding
ENST00000534880 (C9orf131-008) 35041142-35043140 protein_coding
ENST00000537671 (C9orf131-006) 35041150-35042889 protein_coding
ENSG00000241568 (RN7SL338P)
RNA, 7SL, cytoplasmic 338, pseudogene 		ENST00000481467 (RN7SL338P-201) 35049271-35049563 misc_RNA
ENSG00000279608 (RP11-182N22.9)
 ENST00000624351 (RP11-182N22.9-001) 35038625-35044326 TEC
CIL_0005SG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028451-ENSMUSG00000028452 CGP 10090 4:42969604-43000507
GeneTranscriptPositionBiotype
ENSMUSG00000028451 (1700022I11Rik)
RIKEN cDNA 1700022I11 gene 		ENSMUST00000030163 (1700022I11Rik-001) 42969946-42974326 protein_coding
ENSMUST00000139127 (1700022I11Rik-002) 42969946-42983640 nonsense_mediated_decay
ENSMUST00000185904 (1700022I11Rik-004) 42969631-42971298 protein_coding
ENSMUST00000189414 (1700022I11Rik-005) 42969604-42971332 processed_transcript
ENSMUST00000190902 (1700022I11Rik-003) 42969934-42971488 protein_coding
ENSMUSG00000028452 (Vcp)
valosin containing protein 		ENSMUST00000030164 (Vcp-001) 42979963-43000507 protein_coding
ENSMUST00000139843 (Vcp-003) 42992735-42993758 processed_transcript
ENSMUST00000148182 (Vcp-002) 42993712-43000433 processed_transcript
ENSMUST00000154423 (Vcp-005) 42986242-42989330 processed_transcript
ENSMUST00000154541 (Vcp-004) 42984366-42985821 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SG_0001ENSG00000165280ENST00000358901ENST00000417448ENST00000448530ENST00000466100ENST00000479300ENST00000480327ENST00000493886ENSG00000174038ENST00000312292ENST00000354479ENST00000378745ENST00000416537ENST00000421362ENST00000534880ENST00000537671ENSG00000241568ENST00000481467ENSG00000279608ENST00000624351CIL_0005SG_0002ENSMUSG00000028451ENSMUST00000030163ENSMUST00000139127ENSMUST00000185904ENSMUST00000189414ENSMUST00000190902ENSMUSG00000028452ENSMUST00000030164ENSMUST00000139843ENSMUST00000148182ENSMUST00000154423ENSMUST00000154541
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SG_0001ENSG00000165280ENST00000358901ENST00000479300ENST00000493886ENSG00000174038ENST00000312292ENST00000354479ENST00000378745ENST00000416537ENST00000421362ENST00000534880ENSG00000241568ENST00000481467ENSG00000279608ENST00000624351CIL_0005SG_0002ENSMUSG00000028451ENSMUST00000030163ENSMUSG00000028452ENSMUST00000030164ENSMUST00000148182ENSMUST00000154541
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165280 ENST00000358901 10.417±0.00 8.562±0.00 N/A 6.114±2.57 6.576±2.55 4.700±0.00 10.065±4.98 6.339±0.10 5.029±0.00 9.592±0.00 13.159±0.60 20.217±10.37 18.308±4.93 8.943±0.32
ENST00000417448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479300 N/A N/A 27.036±0.00 N/A 38.458±0.00 41.428±0.00 N/A 23.715±0.00 21.897±0.00 32.449±0.00 41.876±0.00 N/A N/A N/A
ENST00000480327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493886 63.610±0.00 59.252±0.00 8.641±0.00 26.492±12.57 39.373±24.57 26.798±12.52 37.406±25.59 37.512±22.71 32.425±19.62 35.168±21.53 53.319±31.26 49.823±31.83 86.504±33.49 68.775±8.59
ENSG00000174038 ENST00000312292 N/A N/A N/A 0.411±0.00 0.246±0.05 N/A N/A N/A 0.651±0.00 N/A 0.153±0.00 N/A N/A 11.063±1.37
ENST00000354479 0.056±0.00 N/A 0.108±0.00 0.160±0.00 N/A 0.060±0.00 N/A N/A 0.081±0.00 0.397±0.00 N/A 0.039±0.00 N/A 2.834±0.46
ENST00000378745 N/A N/A 0.400±0.00 N/A N/A 0.246±0.00 0.458±0.00 0.706±0.00 0.992±0.00 N/A N/A 0.738±0.00 0.069±0.00 N/A
ENST00000416537 N/A N/A N/A N/A 1.156±0.00 N/A N/A N/A N/A N/A 0.853±0.00 N/A 0.147±0.00 N/A
ENST00000421362 N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A N/A N/A N/A 2.480±0.30
ENST00000534880 N/A N/A N/A N/A N/A 0.949±0.00 N/A N/A N/A 1.384±0.00 N/A N/A N/A N/A
ENST00000537671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241568 ENST00000481467 0.232±0.00 0.304±0.00 N/A 0.163±0.03 0.254±0.00 0.349±0.00 0.318±0.00 0.501±0.00 1.303±1.19 0.060±0.00 N/A 1.926±0.00 N/A 0.168±0.00
ENSG00000279608 ENST00000624351 0.071±0.00 0.484±0.00 0.262±0.00 0.231±0.16 0.209±0.03 0.050±0.00 0.191±0.05 0.182±0.00 0.065±0.00 0.067±0.02 0.062±0.02 0.263±0.14 0.037±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028451 ENSMUST00000030163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.503±0.00
ENSMUST00000139127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028452 ENSMUST00000030164 51.198±5.45 44.913±4.49 56.812±4.16 49.773±26.15 55.820±17.33 43.938±7.59 46.210±12.61 56.111±11.64 58.767±12.86 62.508±1.93 108.914±5.28 95.698±26.15 85.044±41.32 38.397±13.75
ENSMUST00000139843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148182 N/A 198.833±86.88 N/A N/A 212.825±9.05 124.926±45.59 N/A 94.613±0.00 59.361±23.61 120.187±6.77 N/A 260.468±75.93 N/A N/A
ENSMUST00000154423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154541 N/A N/A N/A 21.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 29.476±0.00 N/A

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