C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479733 COL13A1-003 ENSG00000197467 9606 + 10:69801931-69958900 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyOvaryPlacentaENST00000479733
Transcript ID Heart Kidney Ovary Placenta
ENST00000479733 0.197±0.00 0.214±0.00 0.074±0.00 0.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0001 VISTA 10:69276019-69878973

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105454 Col13a1-001 protein_coding Mus_musculus 0 2889
ENSMUST00000105452 Col13a1-005 protein_coding Mus_musculus 0 1829
ENSMUST00000105451 Col13a1-003 processed_transcript Mus_musculus 0 1035
ENSMUST00000105453 Col13a1-004 protein_coding Mus_musculus 0 974
ENSMUST00000051826 Col13a1-002 retained_intron Mus_musculus 0 972
ENSMUST00000145469 Col13a1-006 protein_coding Mus_musculus 0 625
ENSMUST00000153120 Col13a1-007 retained_intron Mus_musculus 0 219

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