C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479808 SYP-004 ENSG00000102003 9606 - X:49190542-49200199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastHeartKidneyOvaryENST00000479808
Transcript ID Adrenal Bladder Breast Heart Kidney Ovary
ENST00000479808 0.483±0.00 0.057±0.00 0.291±0.00 0.163±0.00 0.910±0.00 0.053±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006897 ISS endocytosis
GO:0008021 ISS synaptic vesicle
GO:0015485 IDA cholesterol binding
GO:0016020 IEA membrane
GO:0016188 NAS synaptic vesicle maturation
GO:0030054 IEA cell junction
GO:0030285 NAS integral component of synaptic vesicle membrane
GO:0043005 ISS neuron projection
GO:0043621 TAS protein self-association
GO:0048168 IBA regulation of neuronal synaptic plasticity
GO:0048169 ISS regulation of long-term neuronal synaptic plasticity
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048499 NAS synaptic vesicle membrane organization
GO:2000474 ISS regulation of opioid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069520 Syp-001 protein_coding Mus_musculus 0 1262
ENSMUST00000149795 Syp-002 retained_intron Mus_musculus 0 856
ENSMUST00000128890 Syp-003 protein_coding Mus_musculus 0 512
ENSMUST00000150572 Syp-004 processed_transcript Mus_musculus 0 496
ENSMUST00000137515 Syp-005 retained_intron Mus_musculus 0 431
ENSMUST00000134355 Syp-006 retained_intron Mus_musculus 0 302
ENSMUST00000162527 Nup43-002 retained_intron Mus_musculus 0.0001 53

Loading