C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000483456 RP11-641C17.1-001 ENSG00000244183 9606 - 3:60732144-60732636 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartLungOvaryPlacentaTestisENST00000483456
Transcript ID Bladder Breast Heart Lung Ovary Placenta Testis
ENST00000483456 0.459±0.00 0.477±0.41 0.073±0.00 0.897±0.00 0.074±0.00 0.072±0.00 0.296±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034H CIL_00034H_0001 CGP 3:58717365-61251459

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 547
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 531
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 507
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 270
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 0 213
ENSMUST00000185012 Gm12728-003 protein_coding Mus_musculus 0 211
ENSMUST00000184254 Gm12728-002 protein_coding Mus_musculus 0 211
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 1e-23 113

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