C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000485172 RP11-356M17.1-001 ENSG00000240426 9606 + 4:76401251-76401569 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000485172
Transcript ID Breast
ENST00000485172 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071P CIL_00071P_0001 CGP 4:76306026-76421868
CIL_00071O CIL_00071O_0001 CGP 4:76312997-76783253

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 263
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 261
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 259
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 257
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 2e-40 169

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