C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2 pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486956 HMGN2P25-001 ENSG00000228398 9606 - 3:141865012-141865279 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungMuscleENST00000486956
Transcript ID Breast Colon Heart Kidney Lung Muscle
ENST00000486956 0.078±0.00 0.214±0.00 0.073±0.00 0.078±0.00 0.081±0.00 0.211±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I1 CIL_0008I1_0001 VISTA 3:141560621-142161968
CIL_00052E CIL_00052E_0002 CGP 3:141778148-141926514

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 357
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 357
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 357
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 357
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 340
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 339
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 339
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 339
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 335
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 335
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 335
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 0 270
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 235
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 235
ENSMUST00000074801 Gm10298-201 processed_pseudogene Mus_musculus 0 228
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000121255 Gm6985-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000120815 Gm14069-001 unprocessed_pseudogene Mus_musculus 0 224

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