C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | splicing factor 3b, subunit 1, 155kDa | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000487698  |
SF3B1-004 |
ENSG00000115524 |
9606 | - |
2:197418796-197435079  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00042O | CIL_00042O_0002 | CGP | 2:196967017-197435091 |
| CIL_0007X7 | CIL_0007X7_0001 | VISTA | 2:196975905-197591368 |
| CIL_00042R | CIL_00042R_0002 | CGP | 2:197389784-197475308 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005634 | IDA | nucleus |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000187500
|
Sf3b1-003 | retained_intron | Mus_musculus | 0 | 2856 |
|
ENSMUST00000188419
|
Sf3b1-008 | retained_intron | Mus_musculus | 0 | 929 |
|
ENSMUST00000027127
|
Sf3b1-001 | protein_coding | Mus_musculus | 0 | 760 |
|
ENSMUST00000191303
|
Sf3b1-002 | nonsense_mediated_decay | Mus_musculus | 0 | 710 |
|
ENSMUST00000189051
|
Sf3b1-007 | processed_transcript | Mus_musculus | 0 | 675 |
|
ENSMUST00000188859
|
Sf3b1-006 | retained_intron | Mus_musculus | 0 | 394 |
