C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nischarin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488380 NISCH-004 ENSG00000010322 9606 + 3:52455617-52481910 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverOvaryTestisENST00000488380
Transcript ID Adrenal Brain Colon Heart Liver Ovary Testis
ENST00000488380 3.437±0.00 1.287±0.00 2.134±0.00 0.973±0.51 5.185±0.00 1.457±0.47 5.609±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022469 Nisch-004 protein_coding Mus_musculus 0 1554
ENSMUST00000172142 Nisch-001 protein_coding Mus_musculus 0 1544
ENSMUST00000165981 Nisch-002 protein_coding Mus_musculus 0 1321
ENSMUST00000168206 Nisch-005 protein_coding Mus_musculus 0 1146
ENSMUST00000164989 Nisch-006 nonsense_mediated_decay Mus_musculus 0 1040
ENSMUST00000169149 Nisch-021 nonsense_mediated_decay Mus_musculus 0 612
ENSMUST00000168451 Nisch-020 protein_coding Mus_musculus 0 597
ENSMUST00000172370 Nisch-011 retained_intron Mus_musculus 0 381
ENSMUST00000164000 Nisch-023 processed_transcript Mus_musculus 0 255
ENSMUST00000170343 Nisch-010 protein_coding Mus_musculus 0 246

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