C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nischarin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000010322 NISCH 9606 + 3:52455118-52493071 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000345716 NISCH-201 52455508-52493071 protein_coding
  ENST00000420808 NISCH-014 52455617-52481914 protein_coding
  ENST00000460759 NISCH-011 52484204-52487276 retained_intron
  ENST00000464280 NISCH-007 52475616-52478583 processed_transcript
  ENST00000467594 NISCH-012 52489573-52491577 retained_intron
  ENST00000474188 NISCH-009 52478221-52480276 retained_intron
  ENST00000479054 NISCH-001 52455118-52493068 protein_coding
  ENST00000481211 NISCH-008 52476298-52478282 retained_intron
  ENST00000485765 NISCH-010 52480139-52485827 retained_intron
  ENST00000488157 NISCH-005 52470556-52472373 processed_transcript
  ENST00000488243 NISCH-013 52485785-52487653 processed_transcript
  ENST00000488380 NISCH-004 52455617-52481910 protein_coding
  ENST00000489895 NISCH-003 52458692-52493068 retained_intron
  ENST00000490425 NISCH-006 52470556-52476492 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345716ENST00000420808ENST00000464280ENST00000479054ENST00000488380ENST00000489895
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345716 2.816±0.00 N/A 9.605±6.44 5.803±0.00 2.252±0.00 1.275±0.92 2.928±0.00 N/A 2.789±0.00 1.675±0.00 N/A 4.946±0.00 7.760±0.00
ENST00000420808 5.875±0.00 6.593±0.00 N/A 5.429±0.00 N/A 1.674±0.09 2.964±2.38 2.055±0.00 4.157±0.28 1.762±0.21 3.038±0.26 4.592±0.78 11.399±0.09
ENST00000464280 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.907±0.00 N/A N/A N/A
ENST00000479054 N/A N/A 12.844±10.47 N/A N/A 3.511±0.00 7.536±0.00 2.216±0.80 3.526±1.68 0.880±0.00 22.835±18.84 7.547±3.56 8.364±3.63
ENST00000488380 N/A 3.437±0.00 1.287±0.00 N/A 2.134±0.00 0.973±0.51 N/A 5.185±0.00 N/A N/A 1.457±0.47 N/A 5.609±0.00
ENST00000489895 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005178 IEA integrin binding
GO:0005515 IPI:IEA protein binding
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006006 IEA glucose metabolic process
GO:0006915 IEA apoptotic process
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0008217 IEA regulation of blood pressure
GO:0008227 IEA G-protein coupled amine receptor activity
GO:0016020 IDA membrane
GO:0016601 IEA Rac protein signal transduction
GO:0030036 IEA actin cytoskeleton organization
GO:0030336 IEA negative regulation of cell migration
GO:0032228 IEA regulation of synaptic transmission, GABAergic
GO:0035091 IEA phosphatidylinositol binding
GO:0042802 IPI identical protein binding
GO:0048243 IEA norepinephrine secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043077 nisch nischarin protein_coding Danio_rerio
ENSMUSG00000021910 Nisch nischarin protein_coding Mus_musculus

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