C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nischarin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172142 Nisch-001 ENSMUSG00000021910 10090 - 14:31183313-31206826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000172142
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000172142 28.275±0.00 16.101±2.97 3.606±0.00 32.414±0.00 12.839±3.11 1.613±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_00002S CIL_00002S_0002 CGP 14:31139013-31216946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IDA integrin binding
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0006915 IEA apoptotic process
GO:0016601 IDA Rac protein signal transduction
GO:0030036 IDA actin cytoskeleton organization
GO:0030336 IDA negative regulation of cell migration
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345716 NISCH-201 protein_coding Homo_sapiens 0 1655
ENST00000420808 NISCH-014 protein_coding Homo_sapiens 0 1825
ENST00000464280 NISCH-007 processed_transcript Homo_sapiens 0 538
ENST00000479054 NISCH-001 protein_coding Homo_sapiens 0 1565
ENST00000481211 NISCH-008 retained_intron Homo_sapiens 0 429
ENST00000485765 NISCH-010 retained_intron Homo_sapiens 0 351
ENST00000488157 NISCH-005 processed_transcript Homo_sapiens 0 255
ENST00000488380 NISCH-004 protein_coding Homo_sapiens 0 1544
ENST00000489895 NISCH-003 retained_intron Homo_sapiens 0 850
ENST00000490425 NISCH-006 processed_transcript Homo_sapiens 0 505

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