C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nischarin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022469 Nisch-004 ENSMUSG00000021910 10090 - 14:31170930-31206801 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverMusclePlacentaTestisENSMUST00000022469
Transcript ID Adrenal Brain Heart Kidney Liver Muscle Placenta Testis
ENSMUST00000022469 22.828±4.99 31.331±9.33 7.059±0.87 9.786±0.66 8.012±3.24 4.699±0.88 8.108±1.60 2.176±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_00002S CIL_00002S_0002 CGP 14:31139013-31216946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IDA integrin binding
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006006 IEA glucose metabolic process
GO:0006915 IEA apoptotic process
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0008217 IEA regulation of blood pressure
GO:0008227 IEA G-protein coupled amine receptor activity
GO:0016020 IEA membrane
GO:0016601 IDA Rac protein signal transduction
GO:0030036 IDA actin cytoskeleton organization
GO:0030336 IDA negative regulation of cell migration
GO:0032228 IEA regulation of synaptic transmission, GABAergic
GO:0035091 IEA phosphatidylinositol binding
GO:0042802 IEA identical protein binding
GO:0048243 IEA norepinephrine secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345716 NISCH-201 protein_coding Homo_sapiens 0 3544
ENST00000420808 NISCH-014 protein_coding Homo_sapiens 0 1546
ENST00000464280 NISCH-007 processed_transcript Homo_sapiens 0 538
ENST00000467594 NISCH-012 retained_intron Homo_sapiens 0 540
ENST00000479054 NISCH-001 protein_coding Homo_sapiens 0 3454
ENST00000481211 NISCH-008 retained_intron Homo_sapiens 0 429
ENST00000488157 NISCH-005 processed_transcript Homo_sapiens 0 255
ENST00000488243 NISCH-013 processed_transcript Homo_sapiens 0 562
ENST00000488380 NISCH-004 protein_coding Homo_sapiens 0 1554
ENST00000489895 NISCH-003 retained_intron Homo_sapiens 0 1893
ENST00000490425 NISCH-006 processed_transcript Homo_sapiens 0 505

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