C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebral cavernous malformation 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000388 Ccm2-001 ENSMUSG00000000378 10090 + 11:6546887-6596744 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000388
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000388 9.037±3.11 27.111±2.41 17.806±5.34 7.635±1.38 4.193±0.35 7.326±0.72 6.901±2.90 12.445±9.46 5.557±0.73 6.939±1.33 10.980±4.03 29.060±10.02 3.322±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SD CIL_0000SD_0002 CGP 11:6506548-6596744
CIL_0000S8 CIL_0000S8_0002 CGP 11:6546887-6606053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0001570 IGI vasculogenesis
GO:0001701 IGI in utero embryonic development
GO:0001885 IGI endothelial cell development
GO:0001944 IGI vasculature development
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007507 IGI heart development
GO:0035264 IGI multicellular organism growth
GO:0043234 IDA protein complex
GO:0045216 IMP cell-cell junction organization
GO:0048839 IDA inner ear development
GO:0048845 IGI venous blood vessel morphogenesis
GO:0060039 IGI pericardium development
GO:0060837 IMP blood vessel endothelial cell differentiation
GO:0061154 ISO endothelial tube morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258781 CCM2-001 protein_coding Homo_sapiens 0 1829
ENST00000381112 CCM2-201 protein_coding Homo_sapiens 0 1690
ENST00000461377 CCM2-003 processed_transcript Homo_sapiens 0 1594
ENST00000472223 CCM2-007 processed_transcript Homo_sapiens 0 961
ENST00000474617 CCM2-016 protein_coding Homo_sapiens 0 726
ENST00000475551 CCM2-002 protein_coding Homo_sapiens 0 1687
ENST00000476594 CCM2-013 processed_transcript Homo_sapiens 0 311
ENST00000477605 CCM2-005 retained_intron Homo_sapiens 0 1024
ENST00000478169 CCM2-011 processed_transcript Homo_sapiens 0 429
ENST00000478582 CCM2-012 processed_transcript Homo_sapiens 0 649
ENST00000480382 CCM2-014 protein_coding Homo_sapiens 0 246
ENST00000480658 CCM2-008 retained_intron Homo_sapiens 0 366
ENST00000481194 CCM2-004 retained_intron Homo_sapiens 0 664
ENST00000482714 CCM2-006 processed_transcript Homo_sapiens 0 673
ENST00000488727 CCM2-010 nonsense_mediated_decay Homo_sapiens 0 1066
ENST00000492883 CCM2-009 retained_intron Homo_sapiens 0 292
ENST00000541586 CCM2-202 protein_coding Homo_sapiens 0 1406
ENST00000544363 CCM2-203 protein_coding Homo_sapiens 0 782

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