C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490175 SNX5-002 ENSG00000089006 9606 - 20:17941597-17968800 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000490175
Transcript ID Adipose Bladder Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000490175 6.463±0.00 3.785±0.00 10.265±0.00 10.638±4.95 15.657±5.00 11.027±0.00 6.780±0.00 22.172±0.00 15.984±2.29 12.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002MX CIL_0002MX_0001 CGP 20:17693672-17968980

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028909 Snx5-003 protein_coding Mus_musculus 0 1755
ENSMUST00000110030 Snx5-001 protein_coding Mus_musculus 0 1755
ENSMUST00000153033 Snx5-004 processed_transcript Mus_musculus 0 429
ENSMUST00000156936 Snx5-005 processed_transcript Mus_musculus 0 239
ENSMUST00000124389 Snx5-008 processed_transcript Mus_musculus 8e-37 159

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