C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490728 ARHGEF4-006 ENSG00000136002 9606 + 2:131039529-131047253 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverLungMuscleOvaryTestisENST00000490728
Transcript ID Breast Colon Liver Lung Muscle Ovary Testis
ENST00000490728 0.742±0.63 0.933±0.00 0.059±0.00 0.667±0.00 0.199±0.00 2.539±0.84 4.448±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J9 CIL_0001J9_0001 CGP 2:130755435-131047263
CIL_0001J8 CIL_0001J8_0001 CGP 2:130836916-131093460

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047664 Arhgef4-001 protein_coding Mus_musculus 0 889
ENSMUST00000162599 Arhgef4-005 protein_coding Mus_musculus 0 889
ENSMUST00000159747 Arhgef4-004 protein_coding Mus_musculus 0 889
ENSMUST00000162760 Arhgef4-002 retained_intron Mus_musculus 0 712
ENSMUST00000159021 Arhgef4-006 protein_coding Mus_musculus 0 484
ENSMUST00000160855 Arhgef4-003 nonsense_mediated_decay Mus_musculus 0 363
ENSMUST00000159059 Arhgef4-007 retained_intron Mus_musculus 0 363

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