C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001J8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136002-ENSG00000152102 CGP 9606 2:130836916-131093460
GeneTranscriptPositionBiotype
ENSG00000136002 (ARHGEF4)
Rho guanine nucleotide exchange factor (GEF) 4 		ENST00000326016 (ARHGEF4-001) 130916651-131047253 protein_coding
ENST00000355771 (ARHGEF4-009) 131011683-131046189 protein_coding
ENST00000392953 (ARHGEF4-201) 130916651-131047263 protein_coding
ENST00000409303 (ARHGEF4-005) 130930958-131046189 protein_coding
ENST00000409359 (ARHGEF4-003) 130837455-130947230 protein_coding
ENST00000428230 (ARHGEF4-202) 130916651-131047263 protein_coding
ENST00000438985 (ARHGEF4-004) 130916965-131046708 protein_coding
ENST00000439368 (ARHGEF4-010) 131034972-131041276 processed_transcript
ENST00000490728 (ARHGEF4-006) 131039529-131047253 retained_intron
ENST00000496764 (ARHGEF4-007) 131034928-131039670 processed_transcript
ENST00000525092 (ARHGEF4-014) 131041511-131044534 retained_intron
ENST00000525839 (ARHGEF4-002) 130917431-131047251 protein_coding
ENST00000526381 (ARHGEF4-008) 130836916-130914485 processed_transcript
ENST00000527365 (ARHGEF4-013) 131041313-131043670 retained_intron
ENST00000528247 (ARHGEF4-011) 131035485-131040408 processed_transcript
ENST00000532720 (ARHGEF4-012) 131041277-131045558 protein_coding
ENST00000611048 (ARHGEF4-203) 130916651-131047263 protein_coding
ENSG00000252829 (SCARNA15)
Small Cajal body specific RNA 15 		ENST00000517020 (SCARNA15.1-203) 130929762-130929883 snoRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001J8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037509-ENSMUSG00000037503 CGP 10090 1:34678188-34843065
GeneTranscriptPositionBiotype
ENSMUSG00000037503 (Fam168b)
family with sequence similarity 168, member B 		ENSMUST00000047534 (Fam168b-001) 34813221-34843065 protein_coding
ENSMUST00000140534 (Fam168b-002) 34828642-34843065 retained_intron
ENSMUST00000167518 (Fam168b-201) 34813219-34843050 protein_coding
ENSMUST00000170092 (Fam168b-003) 34817235-34842964 protein_coding
ENSMUST00000185231 (Fam168b-007) 34819699-34843004 protein_coding
ENSMUST00000185279 (Fam168b-004) 34819612-34843013 processed_transcript
ENSMUST00000185469 (Fam168b-006) 34817352-34842985 nonsense_mediated_decay
ENSMUST00000191307 (Fam168b-005) 34818009-34843034 protein_coding
ENSMUSG00000037509 (Arhgef4)
Rho guanine nucleotide exchange factor (GEF) 4 		ENSMUST00000047664 (Arhgef4-001) 34801704-34813309 protein_coding
ENSMUST00000159021 (Arhgef4-006) 34750881-34807144 protein_coding
ENSMUST00000159059 (Arhgef4-007) 34801722-34806698 retained_intron
ENSMUST00000159747 (Arhgef4-004) 34678188-34812739 protein_coding
ENSMUST00000160855 (Arhgef4-003) 34801741-34808911 nonsense_mediated_decay
ENSMUST00000162599 (Arhgef4-005) 34732115-34811829 protein_coding
ENSMUST00000162760 (Arhgef4-002) 34801721-34809218 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001J8_0001ENSG00000136002ENST00000326016ENST00000355771ENST00000392953ENST00000409303ENST00000409359ENST00000428230ENST00000438985ENST00000439368ENST00000490728ENST00000496764ENST00000525092ENST00000525839ENST00000526381ENST00000527365ENST00000528247ENST00000532720ENST00000611048ENSG00000252829ENST00000517020CIL_0001J8_0002ENSMUSG00000037503ENSMUST00000047534ENSMUST00000140534ENSMUST00000167518ENSMUST00000170092ENSMUST00000185231ENSMUST00000185279ENSMUST00000185469ENSMUST00000191307ENSMUSG00000037509ENSMUST00000047664ENSMUST00000159021ENSMUST00000159059ENSMUST00000159747ENSMUST00000160855ENSMUST00000162599ENSMUST00000162760
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001J8_0001ENSG00000136002ENST00000326016ENST00000355771ENST00000409359ENST00000428230ENST00000439368ENST00000490728ENST00000496764ENST00000525092ENST00000525839ENST00000527365ENST00000528247ENST00000532720ENST00000611048ENSG00000252829ENST00000517020CIL_0001J8_0002ENSMUSG00000037503ENSMUST00000047534ENSMUST00000167518ENSMUST00000170092ENSMUST00000191307ENSMUSG00000037509ENSMUST00000047664
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136002 ENST00000326016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.733±0.58 N/A 1.481±0.00
ENST00000355771 N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A 0.122±0.08 N/A 0.133±0.00 N/A N/A N/A
ENST00000392953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409359 0.211±0.00 0.334±0.00 N/A 9.144±0.00 0.047±0.00 0.033±0.00 0.058±0.04 0.142±0.00 0.045±0.00 N/A N/A N/A N/A N/A
ENST00000428230 N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A
ENST00000438985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439368 N/A N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000490728 N/A N/A N/A N/A 0.742±0.63 0.933±0.00 N/A N/A 0.059±0.00 0.667±0.00 0.199±0.00 2.539±0.84 N/A 4.448±0.09
ENST00000496764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00 N/A
ENST00000525092 N/A N/A N/A N/A 0.316±0.00 N/A N/A N/A 0.488±0.00 N/A 0.607±0.00 N/A N/A N/A
ENST00000525839 N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.866±0.00 N/A 3.089±0.00
ENST00000526381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.314±0.00 N/A 0.168±0.00 N/A
ENST00000528247 N/A N/A N/A N/A 0.745±0.00 N/A N/A N/A 2.260±0.00 N/A N/A N/A N/A N/A
ENST00000532720 N/A 0.847±0.00 N/A N/A N/A N/A 0.074±0.00 0.377±0.00 N/A N/A 0.829±0.00 N/A 0.305±0.00 N/A
ENST00000611048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A
ENSG00000252829 ENST00000517020 N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037503 ENSMUST00000047534 35.085±7.45 32.666±7.23 43.118±3.84 71.515±43.40 28.293±3.55 27.332±3.31 12.800±1.13 26.367±3.07 15.915±2.14 45.081±1.71 3.865±0.89 47.407±19.54 22.531±10.34 6.120±2.86
ENSMUST00000140534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167518 N/A 19.783±1.89 6.716±0.00 N/A N/A N/A N/A N/A N/A N/A 2.818±1.09 20.501±0.00 N/A N/A
ENSMUST00000170092 38.774±11.15 74.546±10.19 N/A N/A 50.305±11.18 39.913±12.89 12.820±3.12 31.069±3.84 15.031±2.43 59.255±10.12 N/A 54.528±11.27 N/A 12.609±1.06
ENSMUST00000185231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191307 N/A 35.306±2.94 N/A N/A 33.408±2.71 24.594±3.26 14.689±1.94 22.688±0.00 N/A N/A N/A 48.032±9.22 N/A N/A
ENSMUSG00000037509 ENSMUST00000047664 N/A N/A N/A 54.071±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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