C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secernin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490927 SCRN3-007 ENSG00000144306 9606 + 2:174395743-174424570 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000490927
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000490927 1.552±0.00 4.393±2.21 2.679±0.80 0.888±0.00 1.993±0.00 3.951±0.00 2.057±0.00 1.043±0.00 3.299±0.00 2.736±0.00 2.891±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_00096H CIL_00096H_0001 VISTA 2:174031315-174632386
CIL_0008GI CIL_0008GI_0001 VISTA 2:174038535-174640167
CIL_0008K2 CIL_0008K2_0001 VISTA 2:174042582-174643514
CIL_0003IH CIL_0003IH_0002 CGP 2:174348022-174429575
CIL_00063Z CIL_00063Z_0002 CGP 2:174395730-174487094

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090811 Scrn3-001 protein_coding Mus_musculus 0 918
ENSMUST00000139926 Scrn3-006 processed_transcript Mus_musculus 0 492
ENSMUST00000112050 Scrn3-003 protein_coding Mus_musculus 0 451

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