C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491307 RP11-83J16.1-001 ENSG00000231409 9606 + 15:34943080-34943394 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonLiverLungMuscleOvaryPlacentaTestisENST00000491307
Transcript ID Adipose Adrenal Bladder Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000491307 0.049±0.00 0.308±0.00 1.411±0.00 0.133±0.09 0.284±0.00 0.252±0.00 0.047±0.00 1.060±0.41 0.601±0.14 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VH CIL_0008VH_0001 VISTA 15:34591431-35191947
CIL_0006HF CIL_0006HF_0001 CGP 15:34788096-34969839
CIL_0006HG CIL_0006HG_0001 CGP 15:34851782-34988287

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 429
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 425
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 424
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 420
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 230

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