C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sodium channel, voltage-gated, type V, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491944 SCN5A-005 ENSG00000183873 9606 - 3:38614028-38649673 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverOvaryENST00000491944
Transcript ID Colon Liver Ovary
ENST00000491944 0.216±0.00 0.097±0.00 0.119±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BE CIL_0008BE_0001 VISTA 3:38261144-38866061
CIL_0005VU CIL_0005VU_0001 CGP 3:38496127-38649673
CIL_0004RF CIL_0004RF_0001 CGP 3:38548057-38794010

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120420 Scn5a-002 protein_coding Mus_musculus 0 1014
ENSMUST00000117911 Scn5a-001 protein_coding Mus_musculus 0 1014
ENSMUST00000065196 Scn5a-201 protein_coding Mus_musculus 0 863
ENSMUST00000138934 Scn5a-003 protein_coding Mus_musculus 0 196

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