C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004RF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183873-ENSG00000185313 CGP 9606 3:38548057-38794010
GeneTranscriptPositionBiotype
ENSG00000183873 (SCN5A)
sodium channel, voltage-gated, type V, alpha subunit 		ENST00000327956 (SCN5A-006) 38633111-38645776 protein_coding
ENST00000333535 (SCN5A-014) 38548066-38649628 protein_coding
ENST00000413689 (SCN5A-001) 38548062-38649672 protein_coding
ENST00000414099 (SCN5A-004) 38548057-38633349 protein_coding
ENST00000423572 (SCN5A-003) 38548062-38633362 protein_coding
ENST00000425664 (SCN5A-201) 38548062-38649672 protein_coding
ENST00000443581 (SCN5A-202) 38548062-38649672 protein_coding
ENST00000449557 (SCN5A-010) 38550321-38633316 protein_coding
ENST00000450102 (SCN5A-008) 38549968-38633349 protein_coding
ENST00000451551 (SCN5A-203) 38548062-38649673 protein_coding
ENST00000455624 (SCN5A-002) 38549128-38633332 protein_coding
ENST00000464652 (SCN5A-011) 38552981-38554549 processed_transcript
ENST00000476683 (SCN5A-013) 38629842-38633220 retained_intron
ENST00000491944 (SCN5A-005) 38614028-38649673 retained_intron
ENST00000612060 (SCN5A-204) 38614543-38633349 protein_coding
ENSG00000185313 (SCN10A)
sodium channel, voltage-gated, type X, alpha subunit 		ENST00000449082 (SCN10A-001) 38696802-38794010 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0004RF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032511-ENSMUSG00000034533 CGP 10090 9:119483408-119719032
GeneTranscriptPositionBiotype
ENSMUSG00000032511 (Scn5a)
sodium channel, voltage-gated, type V, alpha 		ENSMUST00000065196 (Scn5a-201) 119483408-119562678 protein_coding
ENSMUST00000117911 (Scn5a-001) 119483410-119579016 protein_coding
ENSMUST00000120420 (Scn5a-002) 119484324-119579016 protein_coding
ENSMUST00000138934 (Scn5a-003) 119562537-119563503 protein_coding
ENSMUSG00000034533 (Scn10a)
sodium channel, voltage-gated, type X, alpha 		ENSMUST00000084787 (Scn10a-201) 119608456-119719032 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RF_0001ENSG00000183873ENST00000327956ENST00000333535ENST00000413689ENST00000414099ENST00000423572ENST00000425664ENST00000443581ENST00000449557ENST00000450102ENST00000451551ENST00000455624ENST00000464652ENST00000476683ENST00000491944ENST00000612060ENSG00000185313ENST00000449082CIL_0004RF_0002ENSMUSG00000032511ENSMUST00000065196ENSMUST00000117911ENSMUST00000120420ENSMUST00000138934ENSMUSG00000034533ENSMUST00000084787
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RF_0001ENSG00000183873ENST00000327956ENST00000333535ENST00000413689ENST00000414099ENST00000423572ENST00000425664ENST00000443581ENST00000449557ENST00000450102ENST00000451551ENST00000455624ENST00000464652ENST00000491944ENST00000612060ENSG00000185313ENST00000449082CIL_0004RF_0002ENSMUSG00000032511ENSMUST00000065196ENSMUST00000117911ENSMUST00000120420ENSMUST00000138934ENSMUSG00000034533ENSMUST00000084787
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183873 ENST00000327956 N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A N/A
ENST00000333535 N/A N/A N/A 0.115±0.00 N/A 0.026±0.00 13.010±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000413689 N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414099 0.017±0.00 0.046±0.00 N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A 0.100±0.00 0.028±0.00 0.225±0.13 N/A
ENST00000423572 0.090±0.00 N/A N/A N/A N/A 0.024±0.00 9.214±6.26 N/A N/A N/A N/A N/A N/A N/A
ENST00000425664 N/A N/A N/A N/A N/A 0.012±0.00 N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A
ENST00000443581 N/A N/A N/A N/A N/A N/A 8.427±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000449557 0.026±0.00 N/A N/A 0.045±0.00 0.051±0.00 N/A 4.928±0.00 N/A 0.093±0.00 0.086±0.00 N/A N/A N/A N/A
ENST00000450102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A 0.043±0.00
ENST00000451551 N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A 0.090±0.00 0.413±0.00 N/A 0.219±0.00
ENST00000455624 N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464652 N/A N/A N/A N/A 0.967±0.00 N/A N/A N/A 0.359±0.00 N/A N/A N/A N/A N/A
ENST00000476683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491944 N/A N/A N/A N/A N/A 0.216±0.00 N/A N/A 0.097±0.00 N/A N/A 0.119±0.00 N/A N/A
ENST00000612060 N/A 0.141±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185313 ENST00000449082 N/A 0.005±0.00 N/A N/A N/A N/A 0.029±0.01 N/A N/A 0.009±0.00 N/A 0.005±0.00 0.024±0.01 0.065±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032511 ENSMUST00000065196 N/A 0.098±0.02 N/A N/A N/A 0.086±0.01 19.739±7.56 0.127±0.05 0.028±0.00 N/A 0.104±0.04 0.284±0.04 0.091±0.06 0.109±0.05
ENSMUST00000117911 0.107±0.00 0.072±0.03 N/A 0.138±0.00 0.396±0.00 0.148±0.00 N/A N/A 0.014±0.00 N/A N/A 0.228±0.12 0.075±0.06 N/A
ENSMUST00000120420 0.233±0.07 0.049±0.02 N/A 0.067±0.00 0.491±0.13 0.124±0.05 11.500±2.29 0.147±0.03 0.010±0.01 0.964±0.17 0.076±0.05 0.406±0.21 0.021±0.00 0.200±0.10
ENSMUST00000138934 N/A 0.495±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034533 ENSMUST00000084787 N/A 0.013±0.00 0.002±0.00 0.108±0.05 0.007±0.00 0.027±0.00 0.134±0.08 0.004±0.00 0.043±0.02 0.122±0.08 N/A 0.203±0.08 0.010±0.00 0.133±0.00

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