C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type V, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138934 Scn5a-003 ENSMUSG00000032511 10090 - 9:119562537-119563503 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENSMUST00000138934
Transcript ID Adrenal
ENSMUST00000138934 0.495±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BE CIL_0008BE_0002 VISTA 9:119196374-119798584
CIL_0005VU CIL_0005VU_0002 CGP 9:119444923-119579016
CIL_0004RF CIL_0004RF_0002 CGP 9:119483408-119719032

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IC voltage-gated sodium channel complex
GO:0003231 IMP cardiac ventricle development
GO:0005248 IDA voltage-gated sodium channel activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006814 IDA sodium ion transport
GO:0014070 IMP response to organic cyclic compound
GO:0014704 IDA intercalated disc
GO:0019228 IBA neuronal action potential
GO:0030315 IDA T-tubule
GO:0034706 IPI sodium channel complex
GO:0035725 IDA sodium ion transmembrane transport
GO:0086004 IMP regulation of cardiac muscle cell contraction
GO:0086006 IMP voltage-gated sodium channel activity involved in cardiac muscle cell action potential
GO:0086012 IMP membrane depolarization during cardiac muscle cell action potential
GO:0086046 IMP membrane depolarization during SA node cell action potential
GO:0086063 IMP voltage-gated sodium channel activity involved in SA node cell action potential
GO:0086091 IMP regulation of heart rate by cardiac conduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327956 SCN5A-006 protein_coding Homo_sapiens 0 196
ENST00000333535 SCN5A-014 protein_coding Homo_sapiens 0 196
ENST00000413689 SCN5A-001 protein_coding Homo_sapiens 0 196
ENST00000414099 SCN5A-004 protein_coding Homo_sapiens 4.2039e-45 189
ENST00000423572 SCN5A-003 protein_coding Homo_sapiens 0 196
ENST00000425664 SCN5A-201 protein_coding Homo_sapiens 0 196
ENST00000443581 SCN5A-202 protein_coding Homo_sapiens 0 196
ENST00000450102 SCN5A-008 protein_coding Homo_sapiens 2.8026e-45 189
ENST00000451551 SCN5A-203 protein_coding Homo_sapiens 0 196
ENST00000455624 SCN5A-002 protein_coding Homo_sapiens 4e-39 169
ENST00000491944 SCN5A-005 retained_intron Homo_sapiens 0 196
ENST00000612060 SCN5A-204 protein_coding Homo_sapiens 0 189

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