C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secretogranin V (7B2 protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494364 SCG5-004 ENSG00000166922 9606 + 15:32641699-32697088 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungENST00000494364
Transcript ID Breast Colon Kidney Liver Lung
ENST00000494364 0.164±0.00 0.468±0.20 0.516±0.00 0.339±0.00 0.395±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097N CIL_00097N_0001 VISTA 15:32499326-33100458
CIL_0005IJ CIL_0005IJ_0002 CGP 15:32641676-32745107

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007218 IEA neuropeptide signaling pathway
GO:0030141 IEA secretory granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024005 Scg5-001 protein_coding Mus_musculus 0 569
ENSDART00000114886 scg5-201 protein_coding Danio_rerio 0 217
ENSDART00000153237 scg5-003 retained_intron Danio_rerio 0 217
ENSDART00000152906 scg5-002 protein_coding Danio_rerio 0 217
ENSDART00000045249 scg5-001 protein_coding Danio_rerio 0 217

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