C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secretogranin V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024005 Scg5-001 ENSMUSG00000023236 10090 - 2:113776362-113829121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024005 0.254±0.22 9.420±2.78 0.489±0.02 45.184±6.15 0.206±0.16 2.881±0.73 0.037±0.01 4.321±0.31 0.066±0.04 0.377±0.05 0.073±0.05 2.102±0.77 0.789±0.79 0.562±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097N CIL_00097N_0002 VISTA 2:113391542-113992644
CIL_00065T CIL_00065T_0002 CGP 2:113746164-113829121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004857 IDA enzyme inhibitor activity
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0006886 IDA intracellular protein transport
GO:0007218 IEA neuropeptide signaling pathway
GO:0016486 IDA peptide hormone processing
GO:0030141 ISS secretory granule
GO:0043086 IDA negative regulation of catalytic activity
GO:0046883 IDA regulation of hormone secretion
GO:0051082 ISS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300175 SCG5-001 protein_coding Homo_sapiens 0 861
ENST00000413748 SCG5-002 protein_coding Homo_sapiens 0 848
ENST00000470349 SCG5-006 processed_transcript Homo_sapiens 0 407
ENST00000471027 SCG5-009 protein_coding Homo_sapiens 0 621
ENST00000475752 SCG5-008 retained_intron Homo_sapiens 0 424
ENST00000494364 SCG5-004 protein_coding Homo_sapiens 0 569
ENST00000497208 SCG5-003 protein_coding Homo_sapiens 0 584
ENST00000498069 SCG5-005 processed_transcript Homo_sapiens 0 521
ENST00000498607 SCG5-007 retained_intron Homo_sapiens 0 217
ENST00000614359 SCG5-201 protein_coding Homo_sapiens 0 861

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